Pimephales promelas (fathead minnow): 120492624
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Entry
120492624 CDS
T08155
Symbol
pkd1l2b
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120492624 (pkd1l2b)
04091 Lectins [BR:
pprm04091
]
120492624 (pkd1l2b)
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120492624 (pkd1l2b)
Lectins [BR:
pprm04091
]
C-Type lectins
Others
120492624 (pkd1l2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Ion_trans
Lectin_C
SUEL_Lectin
GPS
Motif
Other DBs
NCBI-GeneID:
120492624
NCBI-ProteinID:
XP_039546713
LinkDB
All DBs
Position
Unknown
AA seq
1926 aa
AA seq
DB search
MDGRLFILLFLIISACGEAGPEGLSCPEHQQAFESSCYEFVALKSSFLSAQAWCEGGGGH
LAFIQSDETQQFLQKHLQAEQDWWIGLVSTSINLTLDTEDGLIWLDGSDVVYSNWLSEPR
LETGCGHINTHSGFHWKISSNCSQEYYFICEFELGRSLSCTDSTILRCGSDHVIEVEESF
YGRKTPHYCRTNMSASNSRATLPQHCSWIDVRDLVAELCNGQQVCMAVADGSSSGEPCPD
LGSYLSVEYHCKNRVSGVIVKRSAGDGGEDSLVQYQSTQRLGTRKGSKEKSDEDRICYSD
GQSALTLLYSCSNCVNKPEKIDLRLENPNCDEINWYVEGDSKSKKKEDSFNKDCLKNGKK
VLELQDDDDNTLEVKAKAIRSLKKDILVVVACQKGGTTSYGEHIILYSLLEIDKNQLKDD
IKGQLTQTNRPDDTEEIKEDLLSDVSFLLEDSEALQEPSDVQFYADALKSIINDEGKVNV
DAQELAGSILDVLSESLTSFDLTPDNITALTGTVKILLECASHILGAFNKDKESDIYGNI
VNVADNVQTFLLINKLPDLEPDIIITPHISVYVNRLSPPNLQKEPFSFQNSLTSFKLPNL
GSDIILPVDEPVDVKMSEFNIDPWIEGQPIHSFVAGLSLSKTDGSVIPVANLTEEIEIFL
PRLVDTAVNSSFLDLRNFSTSMINITTPNIPLVLKLRPSEELTLLVLLGYQNYPTEENHV
AKVTLPQQGDSQDERYTWVLGPSDMGIDVGIYFLLIRPVVSPGVKSINASVTITSITAQC
IFWEETRSNWSDCGCRVGPKTTAEVTQCLCNHLTFFGNSFFVMPNTVDPSKSAELFSNFA
NNPVVVCFIGSIFLAYILTAAWARRKDLQDKAKVKISVLEDNDPFAEYRYLLKVSTGHRM
GASTSSRVIVTLQGAEGECEPHHLTDPDKPVFERGGVDLFLLTTAFPLGELQSIRLWHDN
SGDHPAWYVNSVMVEDLQTEQKWHFLCSSWLAVDIDDCTVERVFPVASEMEMKGFSNLFF
MKTTTDFCDGHIWYSVVSRPPSSNFTRVQRVSCCFSVLLCSMLTSIMFYGIPTDPSEQTM
DMGQIQLTWTQVKIGIQSSFIVFPVNLLIVGIFRHSRPRKKKTKKQKAQKQPEPPQKEKE
IPYETFSPHVENDLTEDFIISDIQRITFLFGNAMRCKTQQNPGQADLSTLLSELQNLIEQ
QHFIHKNDTSSVFWAYTHHLFRQLENLEGEVKLLGPSGFSRPGCYSQVLQQIQSMKKLLE
SLCSSRPLIEQQTRSLSPKKDSGSRKGLPWWFVFVGWLLVAATSVISGYFTMLYGLKYGK
DRSISWIITIAMSFTESLFFTQPIKVFCLAIFFALVVKKINFEDAELVDSLRKKTTTCSD
GLNGVRLAKRDCTHRFYKPPPSSDIEKIKRNMVKQQKARALIMEILVFLGFLWMLLLVAY
GQRDENGFYLTHHIRQSFSAGISDSMNHNDVFAWANSVLLSNLFGKYPGFITDGNSKLVG
GARLRQVRVTRDSCKIAKSMRHAVPHCNVPYSWENEDMGSYGPGWEEFNFVNGSEDTVTA
WQYQSQSTLKAVPVWGMIALYRGGGYVMDLGSDQQNASRKLQYLFDSTWLDVYTRAVFAE
FTVYNANVNLFCIVTLILESTAVGAFQFHSVVQSVRLYQSTGGFQSFLMASQVFYFLFIV
YYMFLQGKLLKRQKWAYFKNKWNLLDLAIIILSWSSLSVFIKRTVQGDQDIEYYQKHKDQ
FPSFHDTAVVDATLGYLMAFLVLLACVKLWHLLRLNPKLHLITSSLQRAWNDMSSFIVVI
FIILLAYSLSCNLIFGWKLYSYKTFPDALKTIFSLQFGMFNYDEVMESEPVLGALIISTC
VIFITFVILTLFVSVILEAFSEEQQDHQPSEEEEIVDLILVKILSLFGIKSKKKEPEEIH
HGDKNT
NT seq
5781 nt
NT seq
+upstream
nt +downstream
nt
atggatggcagactctttattttgctatttctgatcatctcagcatgtggcgaagcagga
ccggaaggtctttcctgcccagagcaccaacaggctttcgagagctcctgctatgagttt
gtagccctgaagagcagtttcctcagcgctcaggcttggtgtgaggggggcggtgggcac
ctggccttcatccagagtgatgaaacccagcaatttctccagaaacacctgcaggcagag
caggactggtggataggactagtgtctacctccatcaacctcactctggacacggaagat
ggtttgatctggttagatggttcagatgtggtctactcaaactggctcagtgagccgagg
ctggaaactggctgtggacacatcaacacacactctgggtttcactggaagatctcaagt
aactgtagtcaggaatattacttcatttgtgaatttgaactgggacgctctctgtcgtgt
acggacagtactatcctgcggtgtggttcagatcatgtgatcgaggttgaggagagtttc
tacggcagaaagactccacattactgcaggaccaacatgtcagcgtcaaactcccgcgca
actttacctcagcattgcagctggatcgatgtgcgggatttagtcgcagagctgtgtaac
ggacagcaggtttgcatggctgtggcagacggttcatcttctggagagccgtgtcctgac
ctgggaagttacctgtctgtggaataccactgcaaaaaccgagtctctggtgttattgtg
aaaagatctgcaggtgacggcggagaagattctcttgttcagtatcaaagtactcagagg
ctgggcactcgcaaagggagtaaagagaaatcagatgaggacaggatttgttattctgat
ggacagagtgcactcactttgctatacagctgctcaaattgtgtaaataagcctgaaaaa
atcgatttgaggctagaaaaccctaactgtgatgaaattaactggtatgtggaaggagac
agtaagtcaaagaaaaaggaagacagttttaataaagactgcttaaaaaatggcaaaaag
gtgctggaactacaagacgatgatgataacacattggaagttaaagctaaagcgattaga
tctctcaagaaggacatcctcgttgtggtggcttgccaaaaaggtggaacaacttcttat
ggggagcacatcatactctattccttactagagatagacaagaatcagctcaaggacgac
atcaaaggacaattgactcaaactaatagaccagacgacacagaagagatcaaagaggat
cttctttcagatgttagttttttgttagaagactctgaagcactccaggaaccatcagac
gtacagttctacgctgatgctttgaaaagcatcattaacgacgagggcaaagtgaatgtt
gatgctcaggagcttgctggttccatactagatgttcttagtgaatccctcacatccttc
gatctgaccccagataacatcactgcactaactggcacagtcaaaatcctccttgagtgc
gctagtcacattctcggtgccttcaataaggacaaagagtctgatatctatggtaatatt
gtcaatgtagcggacaatgtgcagacattcctgctaataaataaattacctgatctggag
cctgacatcatcatcactcctcatatcagtgtttacgtcaacaggttatctccacctaac
cttcagaaagagcctttcagtttccagaacagtctaaccagcttcaagcttccaaatctg
ggctctgatataatactgcctgtagatgagccagtggatgtgaaaatgtcagaatttaac
atcgatccatggattgaaggtcagcccattcatagttttgtggctggtttgtccctctcc
aaaacagacggctctgtcattccagtggcaaacctcactgaggagattgagatcttttta
ccaaggctggtggacacagcagtaaacagctcatttctagatctgagaaacttcagcact
tcaatgatcaatataaccacccccaacatacctctggtcttaaagttacgtccatctgaa
gagttaacactattggtactgctgggttatcagaactatcctactgaggaaaaccacgtg
gccaaagttacacttcctcaacaaggagattcacaagacgaaaggtacacatgggtactg
ggccccagtgacatgggaatagacgtgggcatttacttcctcctcatacgacctgttgtt
tctccgggcgttaagtctattaatgcatcagtaacaattacatccataactgctcagtgc
attttctgggaagaaaccagatccaactggagtgactgtggctgtagggttggccctaaa
acgactgcagaagttactcagtgcctgtgtaaccatttaacgttttttgggaacagtttc
tttgtcatgcccaatacggtagatccatccaagtctgctgagcttttttccaactttgcg
aataacccagtggtggtgtgctttatcgggtctatcttcttagcttacatcctgaccgcg
gcatgggcgcgcagaaaggacctgcaggacaaagccaaggtgaagatttctgtgctagag
gacaatgatcccttcgctgagtaccgatacttgctgaaggtcagcactggacatcgcatg
ggagcctccacttcatcgcgggtcattgtgactctacaaggtgcagagggagaatgtgag
ccccatcacctcactgaccccgataagccagtgtttgaaaggggaggagtggacctgttc
ttactgaccactgccttcccattgggagagttgcagagcatcagactgtggcatgacaac
tcaggagatcatcctgcttggtatgttaactcagtgatggttgaagacctgcagactgag
cagaagtggcacttcttgtgcagctcgtggctggctgttgatatagatgattgtactgtt
gaaagagtgtttcccgttgcgtcagagatggagatgaaaggcttcagcaatttattcttc
atgaagacaacaacagacttctgtgacggccacatctggtactctgtggtcagtcgaccc
cccagcagtaacttcacccgtgtgcagcgtgtctcgtgctgtttctcagtgctgctctgc
tccatgttgaccagtatcatgttctacgggattcccacagacccctctgagcagacaatg
gatatgggccagattcaactgacctggactcaggtgaagattggcatccagagctccttt
atagtgttccccgtgaacctactaattgtgggaatcttcagacactcacgtccccgaaaa
aagaagacaaagaaacaaaaggcacaaaagcagcctgagcctcctcagaaggagaaagag
atcccatatgagaccttctctccacatgttgagaacgatttaacagaagatttcattatc
agtgacatacagagaatcacattcttgtttggaaatgccatgagatgcaaaacacagcag
aaccctggtcaagcagacctcagcactttactgtcagagctgcagaacctcatcgaacaa
cagcacttcatacacaaaaacgacacctcctcagttttctgggcctatacccatcatctg
tttagacaacttgaaaacttggagggagaagtgaagctgctggggccttcaggcttttct
aggccagggtgctacagccaagttttacagcagatccagagcatgaagaaactgctggaa
agtctgtgttcctccagacccctcatcgagcagcagacccgtagtttgagccccaaaaaa
gacagcggcagcaggaagggtctcccatggtggtttgtgtttgtgggttggcttcttgtt
gcagccacaagtgtgatatcaggatactttaccatgttgtatggactgaaatatggaaag
gatcgctcgatcagttggataatcaccattgcgatgtccttcactgagagcctcttcttt
acccagcccataaaagtgttttgtttggcaattttctttgcgttggtggtgaagaaaatc
aattttgaggatgcagaacttgttgactctttaaggaagaaaacaaccacttgctcagat
ggtctcaatggagtgcgacttgctaagagggattgtacacaccgcttctataagcctcca
ccttccagtgatattgaaaagattaagagaaatatggtcaaacagcagaaagcacgagcg
ctcatcatggagattttagtttttcttgggttcttgtggatgcttctcttggtggcatat
ggtcagcgagatgaaaatggattctacctcacacaccacatccggcagagcttcagcgct
ggcatttcagacagtatgaaccacaatgatgtgttcgcctgggctaatagtgtacttctt
agtaacctgtttggaaaatatccaggctttataacagatggaaactcaaaacttgttggg
ggtgctcgtcttcgtcaagttagagtgacgagagactcttgcaagattgccaagtccatg
cgtcacgctgttccccattgcaatgtcccttactcgtgggaaaatgaggacatgggttct
tacggtcctggctgggaagagtttaattttgtaaatggctctgaggacaccgtcacagct
tggcagtaccaaagccagtccacgctcaaagcagttcccgtttggggtatgattgcactt
tatagaggaggaggctatgttatggacctcggttctgaccagcaaaacgcgagcaggaag
cttcaatatctatttgactccacctggttggatgtgtacacaagggcggtttttgcagag
tttacggtgtacaacgctaatgtcaacctgttctgcattgtcacgctgatactggagagc
actgcagtgggcgcgtttcagtttcacagcgtggtgcagagtgtccgtctctaccagtcc
acaggtggctttcaatcgtttctcatggcgtctcaggtcttttacttcctcttcatcgtc
tactacatgtttttgcagggaaagctgttgaagcggcagaaatgggcatatttcaaaaac
aagtggaatctgttagacctggccatcatcattttaagttggagttcattatcagtgttt
atcaagagaacagtgcagggagaccaagacattgaatactaccagaaacacaaagatcag
tttcccagtttccatgacacagctgtcgtagatgctacactgggatatctcatggctttc
ttggttcttctggcctgtgtgaaactgtggcatctgctgagactcaaccctaaactacac
ctcatcacctcctcactgcagcgggcatggaacgacatgtccagtttcattgtggttatc
ttcattatcctcttggcctattctctctcttgcaatctaatatttggatggaagctgtac
tcgtataaaacgttcccagatgcgctcaagacaatcttcagtttgcagtttggcatgttc
aattatgatgaggtgatggaatctgaacccgtgctcggcgctctcatcatttccacttgt
gtcatcttcattacgtttgtgatactgaccctctttgtctcagtcatccttgaggcgttc
agtgaagaacagcaggatcaccagccttctgaggaagaggaaatcgtcgacctgattttg
gtgaagattctcagtctttttgggatcaaatctaagaagaaggaaccagaagaaattcat
catggtgacaagaatacctag
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integrated database retrieval system
