Pimephales promelas (fathead minnow): 120493017
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Entry
120493017 CDS
T08155
Symbol
tnrc6c2
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120493017 (tnrc6c2)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120493017 (tnrc6c2)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120493017 (tnrc6c2)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120493017 (tnrc6c2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
RRM_occluded
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
120493017
NCBI-ProteinID:
XP_039547318
LinkDB
All DBs
Position
Unknown
AA seq
1781 aa
AA seq
DB search
MEEKKKKKQEVETKNTAGKTVTDQKTKVPVSIKPNPSIPSSPILTLNLPVPSASTTSNGK
RNPSNTLQPPLQQSSPRYVHKEVPPRFRQQEQRQLLKRGQPLPTAALNPTSACTQTGVIS
PPGTPTSKRHTGLPHQSGLGPQHENYHWIIPFTNQDKVIIYRNDTDTWPSITYGKSQQTP
ECTLVAERPSEVISNGSSTIMATGASQQGHYPISKASVNLTSSMVSSQGGPNRGWVSEGK
VDLPMGSRGQSSWGASNLNLNPSANPAAWPALGHEGPGVESGPSSIVYSNSLSLSRCGQG
GVAHPHSIIGNSSIGCVNGNLVGDCAWGNPDIPEQHQSPTNVSFNMKPPNLKSDGPNNTK
PEPMSPVNSWRGNLSQSPTEPVSEDGTAFWGNRDAKNGESKDSNCDSASVSSFGHGGSGG
GWSKQPSTDCTGWGKQPATDGTGWDANDGPSQEHMSSWSPDTPVSEGSRDSSEGHPGKRE
RSSSDDLAPLLPRQDLDPRVLCNSGWGQTPVRQHTVWEMEQSPDKKNDAGGEVWGSSSNT
PLTGPAPSPPGCANSNYNTPPRMDTSKSEEPRRATPNTGWGGSAPASAQPNGGWAEPPAD
KKVPNGSVCGWRDPIAEGLNTNACDGQFWASEEKSSSWDDGTSQKKTQCWSDRPKTSSGW
GSSGIGNSGEWGDSSEIRKSGSGSSSRDPENRNWKETQRGWGNSAPTQGGGWGDSQHSNG
SAQGWGGKLQESTCENSGDGGIGSWCGPNSVKQSNSGWASGGHQDPGDEATGWDEPSPSS
IRRKMEIDDGTSSWGDPSAYCKSVNMWDRNNSPNHTGTSKNGSSHSITGPNNNSNQHHSQ
GPTQNHVNGNINNGSPSQGESPLNRMPMGNPGWGELPKVQSNTEPSTWGEPANSIPSVDN
GTSAWGQGQPTKSCGGWGESAYDSSGPYGRGNAPAGSGPCQEGPKPMQGGWGSGTEETGM
NNSQWDADDGDVWNGLTSQDSSCNSWGQSKKGPQRGKVSNQQADVWIMTRLIKQLTDMGF
PKDPAEEALKSNNMNLDQAMSALLEKKTELDKRGMCISEYSNGMNRPIVCRPTNLSKDPS
LDRAPFLDKDGRLLDDTSTSPFMPSPGLKHPLANSSLPSHGLGGISSGLSMQNLNNRQMQ
NGMFGTNGAAQTRVMQQQAPPPQQPVPPLSSAQPTLHAQVPQLLSPQVQAQLLQFAAKNI
GLNPALLTSPINPQQMTLLYQLQQLQVAYQRLQIQQQMMQAQRNVSGPIKQQEQQVARTI
TNMQQQIQQHQRQLAQTLLMKQQQPPPSSHIGLHPNLGKASLDTFIGHPQNSGLSVSDLQ
TKDQQSSPNSFSPYTLSGFTPNMNVNGMEGGGLSLKDPPQPQSRLSQWTHSNSIDSMTAS
AQHMEANLNKNGLISATQSHMPVGKSAMGDSFSPYNLMSRSESPTCTLVSPDSWSQGKSP
NEKISSGSNINWPPEFCPGVPWKGLQNIDPEDDPNMTPGSVPNGPTINTNIQDVNRYLLR
DRTGGKLLEMKSTWSPGSISHTPASLSHELWKVSPGTRNTSAPSRPPPGLTNTRPESQNT
RTSSTWGGNSLGLSQGCTSSYSSEGGTWSTDSPNRGSSWLVLRNLTPQIDGSTLRTLCMQ
HGPLITFHLNLTQGNAVVRYNSKEETAKAQKSLHMCVLGNTTILAEFAGEDDVNRFFAQG
QSLTPTTSWQASKAPGSNQSRLGNTAASHPTGLWSGGGGGTKTVCSTGNSSSRNSGDMLW
GGVPQYSSLWAPPNGDDARVIGSPIPINTLLPGDLLSGESM
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagaaaaagaaaaagcaagaagtagagactaagaacactgcaggaaaaacg
gttactgatcagaaaaccaaagtgccagtctccattaaacccaatcccagcatcccttca
agtcccattctgaccctgaacctgcctgtaccctctgcctccaccaccagcaatggcaag
cgtaaccctagtaataccctacaacctccattgcagcagtccagtccccgatatgtgcac
aaagaggttcctccacgcttccgacagcaggagcagaggcagttattgaagaggggtcaa
cctttacctacagccgctctgaacccgacctctgcttgcactcaaaccggggtcatctcc
cctcctgggacgcccaccagcaaacgccacacgggacttccccatcaaagtggcctggga
ccccagcatgagaattatcattggattatcccatttaccaaccaggataaagtgattatt
taccgtaacgacacagacacttggccttccattacatacggcaagagccaacagacacca
gaatgcaccttggttgctgaacgcccatcagaggtcatcagcaacggtagtagcactatt
atggctacaggagctagccagcagggtcattacccaatcagcaaagccagcgttaatctc
acttctagtatggtctcaagtcaaggtggccctaacagagggtgggtctcagaaggaaaa
gttgacttgcccatgggcagtagaggccagtccagctggggtgcttctaatctgaacctc
aaccccagtgccaaccctgctgcttggccagctcttggacatgaggggcctggggtagag
tcaggcccgagtagcatagtttattcaaattcactttcacttagtaggtgtggccaagga
ggagtggcacaccctcacagcatcattggaaatagtagcattggttgtgtcaatggaaac
cttgtaggggactgtgcatggggcaacccggatatcccagaacagcaccagtcacccaca
aatgtatctttcaacatgaaacctcctaaccttaaaagtgatggaccaaataatactaaa
cccgagccaatgagtccagtgaacagctggagaggaaacctcagtcagtcacctactgag
cctgtcagcgaagatggaactgctttctggggcaacagagatgccaaaaatggagaatca
aaggactcaaactgtgattctgcaagcgtctcctcttttgggcatggaggcagtggtggt
ggctggagcaaacagccaagcactgactgtaccggatggggcaaacagccagccactgac
ggtacaggatgggatgctaatgatggtccatcccaagaacatatgagttcctggagccct
gatactccagtaagtgagggcagcagggatagtagtgagggccacccaggaaaaagagag
aggtcctcaagtgatgatttggcccctttgctgccaaggcaggacttggacccacgtgtc
ctatgtaactcagggtggggacagactccagtgcgtcaacacactgtttgggaaatggag
caaagtccagacaaaaagaatgatgcaggtggcgaggtctgggggtcttcttccaacaca
cctttaactggacctgcaccatctcctcctggatgtgctaattccaattacaacacacct
cctagaatggacacaagcaagagtgaggaacctcgcagagccacgccaaacacaggctgg
ggaggatcagccccagcctctgctcaacctaatggtggatgggccgaacctcctgctgat
aaaaaggttcccaatggatcagtatgtggctggcgtgatcccattgctgagggtctcaac
accaatgcctgtgatggccaattttgggcttctgaagagaagtcttctagctgggatgat
ggtacttctcagaaaaaaacacagtgttggagtgatagacccaaaacctcctcaggctgg
ggaagtagtggcattggtaatagtggagagtggggtgattcttcagaaatacggaaaagt
ggctctggaagttcctctagggaccctgaaaacagaaactggaaggaaacccagagaggc
tggggtaattcagcaccaacacagggtggtggttggggtgattctcaacattccaatggt
tcagcccaaggttggggtggaaaacttcaggaatccacatgtgagaacagtggagatgga
ggcatagggtcatggtgtggtcctaattctgtaaaacagagcaactctggctgggcatca
ggaggccaccaggatccaggagatgaggccacaggctgggatgaaccatctccatcttct
attcgtcgcaaaatggaaattgatgacgggacctcctcctggggtgaccccagtgcttac
tgcaagagtgtgaacatgtgggacaggaataactccccaaatcatacaggaaccagcaag
aatggcagcagtcatagcatcactgggccaaacaataacagcaaccaacaccacagccaa
ggtcccactcagaaccatgtcaatggcaacatcaacaatggctcgcccagtcaaggtgaa
tctcctcttaacagaatgcccatgggaaatccaggatggggagagctccctaaagtccag
tcaaatacagaaccctctacatggggcgagccagccaattccatcccttctgtggacaat
ggcacttcggcttggggccaaggccaacccactaagagctgtggaggatggggcgaaagt
gcttatgactccagtggaccttatggcagaggcaatgcacctgctggatcaggcccctgt
caagaaggtcccaaacctatgcaaggtggctggggatctggaacggaagagactggcatg
aacaacagccagtgggatgctgatgatggtgacgtgtggaacggtctcacatcccaagac
tcctcttgtaactcatggggtcaatccaagaagggcccacaaaggggcaaggtttccaac
cagcaggctgacgtttggatcatgaccagacttatcaagcagcttacagacatgggtttt
ccaaaagatcctgcagaagaagccctaaagagcaacaatatgaatctagatcaggccatg
agtgctttgttggagaaaaaaactgaactggacaaacgggggatgtgcatatcagagtac
agtaatggaatgaataggcccattgtgtgccgacccacaaatctctcaaaagacccttca
ctggatcgtgcccccttcctggacaaggatggcaggctgttagatgatacttcaacctca
ccatttatgccttctcctggtctcaagcacccattggccaatagcagcctccctagccat
ggattgggtggcatctcttctggcctgtccatgcaaaatttgaacaacagacagatgcag
aatggaatgttcggcactaacggagcagcacaaactcgggtcatgcagcagcaggccccg
ccccctcagcaaccagtgccacctcttagctccgcccagcctactctacatgctcaagtg
cctcaacttctctcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacatt
ggactgaatcctgcacttttaacctcaccaataaatcctcaacaaatgaccctgctgtac
caactacaacaactgcaggtggcatatcagcgtttgcagattcagcagcaaatgatgcag
gctcagcgtaatgtctctggtcccatcaaacaacaagagcagcaagttgcacgtacaatc
acaaacatgcagcagcagatccagcagcaccaacgtcagcttgcccagactctgcttatg
aaacagcagcagcctcctccttcctctcacatcggcctgcacccaaaccttggcaaggca
agcctggacaccttcattggtcaccctcagaattcaggcctctctgtgtcagacctgcag
accaaagatcagcagtcttctccaaactccttcagcccttatacactctctggttttacc
ccgaacatgaatgtaaacggtatggaggggggaggtctatctcttaaagaccctcctcag
cctcaatcccgactctcacaatggactcattcaaactccatagattccatgactgctagt
gctcagcacatggaggcaaacctcaataaaaatggtctaatctctgctactcagtcccat
atgcctgtcggaaagagcgccatgggagattctttcagcccatacaatctgatgtcaaga
tctgaatcccccacctgcaccttggtgtctcctgatagctggtcacagggcaaaagtccc
aatgagaaaatctctagtggttccaatatcaactggcctccagaattctgccctggagtg
ccatggaaagggctgcagaacattgaccctgaggatgaccccaacatgaccccaggaagt
gttccaaatggccccaccatcaacaccaacatacaagatgtgaatcgctacctgttacgt
gacaggactggaggaaaactcttggaaatgaagtctacctggtcccctggatccatctcc
cacacaccagcgtctttatctcatgagttatggaaggtttccccagggacacgtaacacc
agtgctccctctcgcccccctccaggcctgacaaacaccaggcctgaatcccagaacacc
agaacctcctccacctggggaggaaactcccttggcctcagccaaggttgtaccagctct
tactcctcagaagggggaacttggagcactgacagtcccaacagaggaagcagctggttg
gtgctcagaaacctcactcctcagattgatggctccaccctacggactctgtgcatgcag
cacggccctctcattaccttccatctgaacctgacacagggcaatgctgtcgttcgttac
aactccaaggaggagaccgccaaagcccaaaaatccctgcacatgtgtgtgctgggtaac
actaccatcctggcagagtttgccggtgaggacgatgtgaaccgcttctttgcacagggc
cagtcccttacccccaccactagctggcaggccagcaaagcaccaggctccaatcaatcc
cggctaggcaacactgcagccagccaccccacaggcctctggagcgggggtggaggaggt
accaaaacagtctgcagtacggggaacagtagcagcagaaacagtggtgacatgctttgg
ggcggtgtgcctcagtactcaagtttatgggctcccccaaacggagatgacgccagggta
atcggcagccccatcccaattaacaccttgctcccaggagacctgctgagtggagagagc
atgtag
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integrated database retrieval system
