Pimephales promelas (fathead minnow): 120493300
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Entry
120493300 CDS
T08155
Symbol
six4b
Name
(RefSeq) homeobox protein SIX4b
KO
K15615
homeobox protein SIX4
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120493300 (six4b)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
120493300 (six4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
120493300
NCBI-ProteinID:
XP_039547746
LinkDB
All DBs
Position
Unknown
AA seq
615 aa
AA seq
DB search
MCCLKPRGVTYQDAFKMSSSSSEVISADEIKRENRGSVKLSVLDPAELQMDNAELLDCSP
ASLAFSPEQVACVCEALLQGGNVERLARFLWSLPQSDLLQGNESILKAQAIVAFHQARYQ
ELYCILENHSFSPSNHSSLQDMWYKARYTEAEKARGRPLGAVDKYRLRRKYPLPRTIWDG
EETVYCFKERSRNALKEMYKRNRYPSPAEKRNLAKMTGLSLTQVSNWFKNRRQRDRNPSE
AQSKSESDNHSTEDESSKGQEDLSPRPLSSGSSSSVAHGTAPPTVYSDGGTTTVIQQIGD
VKMPSHAAGGMSFNGDLASVNAHYINGGGYVQSHSSNALLNGLGTTSSHFLTFDPQRVSH
HSHERLLGGSSVSYSPFPMGVSEPASGKLDAMQTLVSNAEDGIISSVVSFASAPSTPSST
SGALHLSSYSVVNLQGNETTMGLPPLMLPPSSTSSTHGSAPLGNVVSDSSQHSSQTLLYT
QTVKQEPLDVSGSYNYHSEMPLDQGGNLGYTASLFLSSSSTSGSLQPTVTATVTSALSST
EVHHALSQAGRGLQENSVALSSDYRSQDVQLPNSLHVASRAGEGPVRVVCGDLDMEGKEL
AKLQTVQMDDDGSDL
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtgctgcctgaaacccagaggagtgacttatcaggacgcgttcaaaatgtcttcttcc
tcaagcgaggtcattagtgccgatgagatcaagagggagaatcgtgggagtgtcaagctg
tcagtgctggaccccgcggagttgcagatggataatgccgaacttttggactgctcgccg
gcctccctggccttttccccagagcaggtcgcgtgcgtctgcgaagcgctgctgcagggt
gggaatgtggagcgcctggccaggttcctctggtcactgccgcagagtgacctgctgcag
gggaacgagagcatcctgaaagctcaagcgatagtcgcgttccaccaggcccgctaccaa
gagctctactgcattttggagaaccacagtttcagtccgtcaaaccactcgtctctgcag
gatatgtggtacaaggcgcgctacaccgaggcggagaaggcgcggggcagaccgctgggt
gccgtggacaagtatcgcttacgcaggaaatatccgctgcctcggacaatctgggacgga
gaggagaccgtgtattgtttcaaagagaggtctaggaacgcactgaaggaaatgtacaag
cggaaccggtacccatctccagccgagaaacgaaatctggctaaaatgacaggactttct
ctgacgcaggtcagcaactggttcaaaaataggaggcagagagacagaaatccatccgag
gcgcagtcaaaaagtgagtcggataatcacagtacagaagatgaatccagtaaaggccag
gaggacttgtcaccacgtcccctctccagcggctcttctagctcagtcgcacatggaaca
gccccccctacagtttactcggatggaggaacaaccaccgtcatccaacaaattggagat
gtaaaaatgccctcacacgcagctggaggaatgagttttaacggtgacctagcgagcgtg
aacgctcactacatcaacggcggaggctacgttcagtcacacagtagcaatgctctcctg
aatggacttggcaccacaagcagccatttcttgacctttgatccccagagggtctcccat
cacagtcatgagaggctgttaggtgggtcttctgtgtcttattctccattcccaatgggg
gtttctgaacctgcctctggaaagctcgacgccatgcagactctagtttccaatgctgaa
gatggaattatttcttcagtagtttcctttgcttcagccccctccacgccgtcctctacc
tcaggagcccttcatctcagcagttacagtgtggtcaatcttcaaggaaatgaaaccacc
atgggtcttcctcctctaatgctgccaccatcctcaacatcatccactcacggctctgct
cctttgggcaatgtggtcagtgactcttcccagcactcgagccaaaccctgctttacacc
cagactgtgaagcaggagcctttggatgtgtccggaagctacaattatcattctgaaatg
ccactggaccaaggaggcaacctgggctacacagcctcccttttcctttcgtcttcctcc
actagtggttctcttcaacctaccgtaacagccacagtcacctctgccctctccagcacc
gaggtacatcacgctctgagtcaagcgggacgtggactccaagagaacagtgtagccctg
tcttcagactacaggtctcaagatgtccagctgcccaacagcctgcatgttgcttctagg
gcaggagaaggcccagttagggttgtttgtggggatctggacatggaagggaaagagctg
gccaagctgcagactgtacagatggacgatgatggaagcgacctctga
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