KEGG   Pimephales promelas (fathead minnow): 120493527
Entry
120493527         CDS       T08155                                 
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase SH3RF1-like
  KO
K12171  E3 ubiquitin-protein ligase SH3RF [EC:2.3.2.27]
Organism
pprm  Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:pprm00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:pprm01009]
    120493527
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pprm04121]
    120493527
Enzymes [BR:pprm01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     120493527
Protein phosphatases and associated proteins [BR:pprm01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     120493527
Ubiquitin system [BR:pprm04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    120493527
SSDB
Motif
Pfam: SH3_9 SH3_1 SH3_2 zf-RING_UBOX zf-C3HC4 zf-C3HC4_2 zf-RING_2 zf-C3HC4_3 zf-RING_5 zf-C3HC4_4 zf-RING_4 zf-RING_11 Prok-RING_4 zf-Nse
Other DBs
NCBI-GeneID: 120493527
NCBI-ProteinID: XP_039548116
LinkDB
Position
Unknown
AA seq 883 aa
MNDYTEKDCVSVKMDESALLDLLECPVCLERLDATAKVLPCQHTFCRRCLLGIVGSRGEL
RCPECRTLVESGVDELPSNILLVRLLDGIKQRPRRTGSMHGTCTNGSAAAGVRAQGAGVG
QRDPGPTGAQRVQAKSTPVRGVPQLPCAKALYNYDGKEPGDLKFSKGDIIILRRQVDENW
FHGEMGGVHGFFPTNFVQVIKPLPQPPPQCKALYDFELKDKEADKDCLPFSKDDILTVIR
RVDENWAEGMLGDKIGIFPISYVEFNSAARQLIELDKPSEGGGDSSEGPSSSSSGPQANG
SQKATGEKKNSKKRHSFTSLTMSHKPCLAPPPQRHSMEISGPVLISSSNPTAAARIGELS
GGLSSSAPSQVHICTSGLIVTPPPSSPVTTATVFTFPPETSYASIPVDALPPPPPPPPQS
RSSAVGAAALNAGQRPSPAVVDQSGRQRPTVYVAMFPYTPRKEDELELRKGEMFLVLERC
QDGWFKGTSMHTGKIGVFPGNYMSPVNRTVSGSSQPKVPLTLCSQAGRGVTIVSPSSAPL
GAALGSVDPSKPLPVCPNPTPSSSLPAAVVTAAHVPTGQHPKVLMHVTSQMTVNQARSAV
RTAVSHSQDRPTAAVTPIQSHNSVAYLPSTAVILQASPVLGSSPGSSSARIGVAMGCAAA
SLTPPNVSAASLDGDVMRPVSVVALPVNPGSTKSLGGASNQGVACRLDKDSKREKKGLLK
LLSNKKKLRLSPPSSPTLEAEQSIVMEMPHGAIGPETAPPSSALVALGHNGRAGACPMDS
ELSVSNTDAASHRCSSQDNCMPIAPPPRQPCSSLLSVQHDGRPIVCERYRVVVSYPPQSE
AELELKEGDIVFVHRKREDGWFKGTLQRNGRTGLFPGSFVDSI
NT seq 2652 nt   +upstreamnt  +downstreamnt
atgaacgactacactgagaaagattgtgtgagtgtgaaaatggatgagtctgcgctcctg
gacctgttagagtgtccggtctgcttggagcgactggatgccacggcaaaggttttgccg
tgccagcatacgttttgtcggcgatgcctgcttggaattgtggggtcgcgtggggaactg
cgctgcccggaatgccgcacgctagtggagagtggcgtggatgagttgcctagcaacatc
ctcctggtacggctactggacggcatcaagcagaggccgaggaggacgggaagcatgcat
ggcacgtgtactaatggatcagcagcggcgggggtcagagcacagggtgccggagttggc
cagagggatccaggtcccacaggggcacagagggtccaggccaagagcactccagttagg
ggagtacctcagctaccatgtgccaaggccttatacaactatgatggcaaagaacctgga
gatctcaagttcagcaagggtgacatcatcatcctgcgtcgacaggtggatgaaaactgg
ttccatggagagatgggtggagttcatggattcttccccaccaacttcgtccaggtcatc
aaacctctcccacagccgccccctcaatgcaaggccctgtatgactttgagctgaaagac
aaggaggctgacaaggactgcttgccattctcaaaggatgatattcttactgtgattcgt
cgtgtggatgagaactgggcggaaggcatgctgggagataagattggcatcttccccata
tcttatgtagagtttaacagtgcagctcgacagctcatagaactggacaagccatctgaa
ggtggaggagactccagtgaagggccatcatcctcttcctcaggcccccaagccaacggc
tcccagaaagctactggagagaagaagaatagtaaaaagcgacactccttcacctcccta
actatgtcccataagccttgcctggcccctccacctcagagacactccatggagatcagc
ggcccggttctgatcagctcctccaaccccacagccgcggcccggatcggagagctcagc
ggaggcctgtcctccagcgcaccttcacaggttcatatttgcacatcaggactcattgtt
actcctccaccaagcagtcctgtcaccacggcgacagttttcacatttcccccagaaacc
agctatgcttctattccagtggatgctcttcctcctccacctccgcctccacctcagtct
cggtcctctgctgtgggcgctgccgctttgaatgctgggcagaggccttcacctgctgtg
gttgaccagagtggccgtcagagacctacagtgtatgtggcgatgtttccctacacaccc
cgtaaggaagatgagttggaattgaggaagggagagatgtttctggtgctggagcgctgt
caggacggctggtttaaaggaacgtccatgcacactggcaagattggagtgttccctggt
aactacatgagtcctgtcaacaggactgtttctggcagcagtcagccaaaagttcccctg
accctgtgctcacaggctggacgtggcgtcaccattgttagcccctcctctgctcctctt
ggagccgccctggggagtgtcgaccccagtaaaccccttccagtctgcccaaatcccacc
ccatctagctcactgccggctgctgtagtaacagctgcacacgtgcccactggtcagcac
cccaaagtgctcatgcatgtgacgtcacagatgaccgttaaccaggcacgcagtgcggtc
aggacagctgtgagtcatagtcaggaccggcctacggcagcagtgacgcccatccaatcc
cacaattctgtggcctaccttcctagcacagctgtgattcttcaggcctcacctgtcctc
ggctccagcccgggatcctcctcagccagaatcggtgtggctatgggatgtgcagccgcc
tccttgacccctcctaatgttagcgctgcttctttggatggtgatgtcatgagacctgtc
tctgtggtagcacttcctgtgaaccctggcagcacaaaatctctaggtggtgcctcgaac
cagggtgttgcttgtagattggataaagacagcaagagagagaagaaaggcctgctgaaa
ctgctgtctaataaaaagaagctccgcctatctcctccatcctcccctacactggaagca
gagcaatctattgtcatggagatgccccatggtgccattggacctgaaacggctccgcct
agctcagcattggtggcgctaggacacaacggccgtgctggggcctgtccgatggattct
gagctctctgtgtcaaacacagacgcagcgtcacacaggtgcagctctcaggacaactgc
atgccgattgccccgcctccacgacagccgtgctcctccctcctctccgtgcagcacgac
ggacgaccaatcgtgtgcgaaaggtaccgtgtggtggtgtcttaccctccccaaagcgaa
gcagagctggaactcaaggagggagacattgttttcgtgcacagaaaacgagaggacgga
tggtttaaaggaacactacagagaaacggccgaaccgggctttttcctggcagctttgtt
gacagtatctaa

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