Pimephales promelas (fathead minnow): 120493544
Help
Entry
120493544 CDS
T08155
Symbol
hif1ab
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha b
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04137
Mitophagy - animal
pprm04140
Autophagy - animal
pprm04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120493544 (hif1ab)
04137 Mitophagy - animal
120493544 (hif1ab)
04148 Efferocytosis
120493544 (hif1ab)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120493544 (hif1ab)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
120493544 (hif1ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
HIF-1a_CTAD
HIF-1
PAS
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
120493544
NCBI-ProteinID:
XP_039548140
LinkDB
All DBs
Position
Unknown
AA seq
773 aa
AA seq
DB search
MDTGVVTEKKRVSSERRKEKSRDAARSRRGKESEVFYELANQLPLPHNVTSHLDKASIMR
LAISYLRMRKLLISGDTEKENELESQLNGFYLKALEGFLMVLSEDGDMVYLSENVSKSMG
LTQFDLTGHSVFEFSHPCDHEELREMLVHRMGSKKTKEQNTERSFFLRMKCTLTSRGRTV
NIKSATWKVLHCAGHVRMQERSESSGDSGFKEPPLTYLVLICEPIPHPSNIEVPLDSKTF
LSRHTLDMKFSYCDERITELMGYEPDDLLNRSVYEYYHALDSDHLTKTHQNLFAKGQATT
SQYRMMAKKGGFVWVETQATVIYNPKNSQPQCIVCVNYVLSGIVEGDIVLSLQQTLTESK
GVEKESQELKDVDGHVDMLKLFKPDSLKCPMESSDLYEKLKAEPEALTVLAPAAGDTIIS
LDFNNSDSDMQSLKEVPLYNDVMLPSSSEKLPISLSALTPSDSSPALSKLESGAEDFPFS
SASDCVPDSTNKLSTSGLISSGPNSPMDYSFQVDSDISSEFKLDLVEKLFAIDNEAKTPF
SSQAMGDLDLEMLAPYIPMDDDFQLRIPSPLDPLPSSSLSVSAMSSLFQPLPSPASPASS
TSSAVTHEPSSQAPSPLHQLQEVCSAPVSPFSGSRDASPVRSPTPQSSNQLHNRELSPKM
LAIQNVQRKRKLEVTSLSEAVGLGALLQSVDSAIEPGKRAKVLEVKGSSVLGGNKTILIL
PSDVASRLLCSSLESSGGLPQLTRYDCEVNAPVQDRHHLLQGEELLRALDQVN
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggatactggagttgtcactgaaaagaaaagggtgagctcggagcgcaggaaggagaag
tccagggatgcagcgcgatctcgcaggggaaaggagtctgaggtgttctacgagttagcg
aaccagcttcccctgccacacaatgtcacctcccacctggacaaagcctccatcatgagg
ctggccatcagctatctgcgcatgaggaagctgcttatctctggtgacacagagaaagaa
aatgagctggagagtcagttgaacggcttttatctgaaggccctggagggtttcctcatg
gtcctatctgaggatggagacatggtttatctttctgagaatgtcagcaagagcatgggc
cttacacagtttgatctgaccggtcacagcgtctttgaattttcacacccatgtgatcat
gaggagttgagagagatgctggtccataggatgggatccaaaaagaccaaggaacaaaac
acagagcgcagcttcttcctgcgtatgaagtgcacactcactagcagaggacgtactgtc
aatatcaagtctgctacgtggaaggttcttcactgtgctggtcatgtccgtatgcaggag
cgcagcgagagttcgggagactctggctttaaagagccccctctgacttaccttgtgctc
atctgtgagcccattcctcatccctcaaacatcgaggtgcctctggacagcaagaccttc
cttagccgtcacactctggacatgaagttctcgtactgtgatgaaaggatcacagagctg
atgggatatgagccggatgatctgctgaacaggtcagtgtacgaatactatcatgccctg
gattcagatcacctcaccaagacacatcaaaacctgtttgctaagggtcaggctaccaca
agccaataccgcatgatggctaagaaaggtggttttgtttgggtggagactcaggccacc
gttatctacaaccccaagaattcacagccacagtgcattgtgtgcgtcaactacgttctc
agtggcattgtggagggggacattgtcctgtcactgcaacagaccctgacagagtccaag
ggtgtagagaaagagagccaggaattgaaagatgtggatggacatgtggacatgctcaaa
ctcttcaagccagatagcctcaagtgtcccatggagagctctgacctttatgagaagcta
aaagcggagcctgaggccctcactgtgttggcgcctgcagcaggagacaccatcatctct
ttggatttcaacaactcagactctgacatgcagtcgctgaaggaggtgcccctctacaat
gatgtcatgctgccctccagcagtgagaaactgcccatcagtctgtctgctctgacaccc
agtgactcaagcccagctctgtccaaactagagtccggagcagaggacttccctttcagc
tctgcctctgattgtgttccagactccacaaacaaactctctacatctgggctcatctcc
tcggggcccaacagccccatggattacagtttccaagtggactctgacatcagttctgaa
ttcaaactggacctggttgaaaaactgtttgctattgataacgaggcaaagacccccttt
tcctcccaggccatgggggatctcgacctagaaatgctggctccgtacatcccaatggat
gatgacttccagctgcgcatcccctctccactggatccgctgccctccagctctctctct
gtttcagccatgagctccctgttccagcccctaccctcacctgcatctccagcctcttcc
accagcagcgcagtgacacatgagccatcatcacaggccccttcacctctgcatcagctg
caggaggtgtgcagcgctcctgtctcgcccttcagcggcagtcgggacgcttccccggtt
cgatcccccaccccgcagagcagcaatcagctccataacagagagctgtctccaaagatg
ttagccatccagaatgtccaacgtaagagaaagctggaagtgacatctctttctgaggct
gttggactgggggctttgcttcagagtgtggacagtgctatagagcctggaaaaagagca
aaggttttagaagttaaaggatcaagtgtgctcggggggaacaaaactattcttatactg
ccctctgatgtggccagtcgtctgttgtgcagttctttagagagcagcggcgggctgcct
cagctaacacgttatgactgcgaagtcaacgctcctgtgcaggaccgtcatcatctgctc
cagggagaggagctcctgcgtgctctggaccaagtcaactga
DBGET
integrated database retrieval system
