Pimephales promelas (fathead minnow): 120493828
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Entry
120493828 CDS
T08155
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5
KO
K22615
NLR family CARD domain containing 5
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
pprm04054
]
120493828 (nlrc5)
Pattern recognition receptors [BR:
pprm04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
120493828 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
AAA_16
LRR_NXF1-5
LRR_8
AAA_30
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120493828
NCBI-ProteinID:
XP_039548639
LinkDB
All DBs
Position
Unknown
AA seq
1751 aa
AA seq
DB search
MRMEREDWSGGVLVAQEASALVDLLCKQDSGVLDRIFALVEPKAMDQLRSLTNNRDLVSA
TVDYFKTSEHNICRRFLTIIYQYCENIPFLLETTLVSVAENSIGTNFSHTSDDDNSSPSR
IVKRPRLDHLKTYTDALKSMILQKHETVTQAVLKDISLGDTWVYLKHRNPSRVKDRTIQP
LDSHEGEESEHKVSVESLLKTTGRVVVLLGQAGSGKTLLVHCLGRSWAEGSFPSIHLLFL
LEFRQLNLISRDLSLKDLLFLFYPACEDDEESEAVFEFILSNPEKVCFIFDGYDEFRAKL
TNPRKLESFIDPNKPLPMTDLLSVLCNRKILPDCTVFVTCRPRDVTDMFASPGFITCELQ
GFDRLGVKEYAEHYFHEKGDEFKKKAVNLLMDSRHLLSMSNVPGLCHICCVCVDHLFSSD
GSQTDLQLPSSLTEIYMQILLASLRRFNGGGVSGTPLLQRYRTKIVEMSQLALKGLEGST
IVFMDTEVPPELQDFGIKSGILSCVKLTYEDGSSGYGFTFMHLTMLEFLAALHLMTSQNI
TEGQLKKKLNLKTRWTTKTDPKSVFTDSLHLYVCGLAAEVCISSLVQLQLGEGAAAWVRK
RQAVVRNVLQGFAGSTSQTGPKIVELCRCVHETQDSNLARAVGSRPQFELRNIRLNAVDM
DSLAFVTAAAHQNVCLDFGGCSIDLDCLEILPSFKNVDRLIFRSRKYDDRFAEALCGILS
KLQALRRLDFISGGLTDIGAAKLARALEDCPHITHLDVSDNSLKDEGIRVIAETLSRLPN
ICSVLMGKNIISTDGVLTLIERMAACDSIQEVHVEGNKEITLSFLQSSDTICENTDLNNT
EVTKNVRFKQCNITVSHVASLCNKLKGFSFITLLDLSYNSLGNKGLKKILDLLPKLGTIQ
EINLSENGVDLDGVVMLASALCNQKNLRRVNASGNENKKLVLWFDTSRRHASRQLTPSEN
GIHVHKKLSLTHFDIQPAYMAKLCKQLVKCESLLEIEFSHLKLSNESIEKLMLILPEMSS
LHLLNLSHVDLSTNGALLLVRSLADCQRVTAVELRHQAEAFIKLVPEKAEAAICKLTEYK
LSKTNVEKLSRILENCPRLSELVLSHNLLRDEGVKCFVDYLPKLKISSSVSISGNRMTQV
GALDLVNSMNTCEKVVAVEVSLGVEDQSLIHFVQEHVNGKTLRLRECSFDVIHLKKLVEI
LNRCPRLLTLEFSSNSLHSRGQPLLDSLAELSTIHTVKLRNNGLISEQIEDFVKQFSRCH
QHSDIRIEEPWLTGNAVISLIAKCLILQPHIREIRVNRASINIITEANSSPSSTSIVYPD
NVLPALQTISFDGCDIEGQHLTPLTFPIQKCLALEDLKFSQLKVDRKGAEFLSAVIPSLP
NLRSLTLDLKAAAEDDLETLAEALPSTSVFESLSLSQLVLGDRGAAILGRALQSVPNLKS
FNLSQCSGWTTARGCDLVKGLAQCVLLAEIRLDSLVLDEEGITILTQGFSHLYSLRRLSL
NNIRVVTSDTFVNGTGIICLLASFKGFRQMEEIELESWRMGDGGTYELVKYIPSWTKLLK
LSLSDNSISDQAGEKLLAALSHCRALQKLQLSKNKLGQASAAKLSQVLPLLPQLSELNLS
ENQFDPQGSKALCEGLISMKALKILHLTSFGSSDLADVASSLKHCPSIEDVSLSWNGCGD
SLASTLAKILPLCTKLKRLDLEANNITKTGATAIAKCLPSCPSIEVIRLWRNPIFKWDDN
PKDQRLNFSSV
NT seq
5256 nt
NT seq
+upstream
nt +downstream
nt
atgaggatggagagggaggactggtcagggggtgtcctggtggcccaggaggccagtgca
ctggtggacttgctctgcaaacaggacagtggtgttctggatcggatctttgccttagtg
gaacctaaagcaatggatcagctacggtcactgacaaacaacagagaccttgtctcagcc
actgtggattacttcaaaacgtcagaacacaacatatgtagaaggtttctcaccatcata
tatcagtactgtgaaaacattccctttcttcttgaaactacactggtatccgtagcagaa
aattcaattggaacaaacttcagtcatacaagtgacgatgataattcttcaccatcacga
attgtgaaacgtccacgactagatcatttgaagacatacacggatgctcttaaatccatg
atactgcaaaaacacgagacagtgacacaggctgtgttaaaagacatcagtctgggtgac
acatgggtatatttaaaacacaggaacccttctcgagtgaaagacaggaccatccagcct
ctggacagtcatgaaggagaagagtcagagcataaagtgtccgttgagtctcttttgaaa
accaccggcagggttgttgtgctgctgggccaggctggatctggtaagaccctgctggtg
cactgcctcggccgtagctgggctgaaggctccttcccgtccattcacctgctgttcctg
ctggagttccggcagctcaatcttatctcacgagatctttccctgaaagatctactcttt
ctcttctatcctgcttgtgaggatgatgaggaaagcgaagcggtgtttgaattcatcctc
tccaaccctgagaaggtctgcttcatattcgatgggtatgatgagtttcgtgccaagctt
acaaatcctagaaaacttgagagcttcattgacccgaacaaacctctgccaatgacagat
ctcctctctgtactgtgcaatcgtaaaatccttccagattgcacagtttttgtcacctgt
agaccacgagatgtgacagacatgtttgcgagccctggtttcataacctgtgagcttcag
gggtttgaccgattgggtgtgaaggaatacgcagagcactactttcacgaaaaaggagat
gaattcaaaaagaaggctgtaaacttgttaatggacagccgtcacctcttgtcaatgtcg
aatgtaccaggactctgtcatatctgctgtgtgtgtgtggatcatctgttctccagcgat
ggatctcaaactgatctacagcttccatcgtccttaacggaaatctacatgcaaatcttg
ttggcgtcgctcagacgcttcaatggaggtggggtgtctggtacacctctacttcagaga
tacagaactaaaattgttgagatgagccagttggccctcaaaggactggagggaagcacc
atagtcttcatggacacagaggtgcctccagaactccaggattttggcatcaaaagcgga
atactgtcttgtgtcaagctgacgtatgaggatggatcttcaggatatggtttcaccttc
atgcacctcacaatgctggagtttctcgctgctctccacctcatgaccagtcagaacata
acagagggtcaacttaagaagaagcttaacttgaaaacccgctggaccacgaagactgac
ccaaagtctgtctttacagattctctccatctttacgtatgtgggcttgctgcagaggtc
tgcatctccagtttggtccagctacaactgggcgagggagccgcggcttgggtacgaaag
cgccaagctgttgtccgtaatgttttgcaaggtttcgctggaagtaccagtcaaacgggc
cccaaaattgtggagctgtgccgatgcgttcatgaaacacaagattcgaacttggcaaga
gcggttggttcgagaccgcagtttgaactgaggaatatcagactcaacgctgttgacatg
gattctttggcatttgtaacagcagctgctcatcagaatgtatgtctggactttggtggc
tgttcaattgacttggattgtttggaaatcctccctagtttcaagaatgtggatcgtctc
attttccgtagccggaaatacgatgacaggtttgcagaggctttgtgtggtatcctgtct
aaactccaggccttgcggcgattagattttatcagtggaggcctcactgatattggagct
gcaaaacttgccagggctttggaggactgtccccacatcacacacctggatgtcagcgat
aactccttgaaagatgaaggtataagagtgattgcggaaacactatccagactgcccaac
atctgctctgttttgatggggaagaacatcatctccacagatggagtcctcacactcatt
gagaggatggctgcctgcgactccattcaggaagtccatgttgaggggaataaagagatc
accctttccttcttacaaagctctgacacaatatgtgaaaacacagacttgaataacacg
gaagtgacaaagaatgtaaggtttaagcagtgtaacatcaccgtttcccatgtagccagt
ctgtgtaataaactcaagggcttctccttcataacccttttagatttgtcctacaactcg
ctgggtaacaagggcctaaagaagattctggaccttctgcctaaactaggaacaattcag
gagatcaatctcagtgaaaatggtgttgatctggatggggtggtgatgcttgcttctgcc
ctctgtaaccagaagaacctgaggagagtgaatgcaagtggaaatgaaaacaaaaagttg
gttctttggtttgacaccagcagaagacatgcttcaagacagctgaccccaagtgaaaat
gggatacatgtccataaaaagctgagtttaacccattttgatatccaacctgcctacatg
gccaagctgtgtaagcagctggttaaatgtgaaagccttttggagattgagttctcccat
ctaaaactatcaaatgagtctattgagaagttaatgttgatccttcctgaaatgtcttct
cttcatctactgaacttaagtcatgttgacctgtctacaaatggggctttgttattggtc
agatctcttgctgactgccagcgtgtcacggctgtagaactaagacaccaggcagaagca
ttcatcaaacttgttcctgaaaaagcagaggcagcaatttgcaagctcacagagtataaa
ctgagcaaaactaatgttgagaagctctcaaggatactggagaactgtccccgcctatct
gaacttgtcttgtctcataaccttcttcgagatgaaggggtgaaatgttttgttgattat
ttgcccaaactaaagatctcaagctcagtgagcatcagtggcaaccgaatgactcaagta
ggtgctctggatctggtaaactcaatgaatacttgtgaaaaggttgttgctgtcgaagtc
agtcttggagtggaagatcagtctttgattcattttgtgcaggaacacgtcaacggcaag
actcttaggttaagggagtgcagttttgatgtcatacacttgaagaagcttgtggaaatc
ctgaacagatgccctaggctacttacattagaattttcttctaattcactgcatagtcga
gggcagcctttactggacagcctggctgagctctccacaatccatactgtgaaattgaga
aataatggtctgatttctgagcaaatagaggattttgtcaaacagttcagtagatgtcac
caacacagcgacatcaggattgaagagccatggctgacaggaaatgctgttataagtctc
attgccaaatgtcttattctgcagccacacatcagagaaatcagggtcaaccgtgcttcc
ataaacatcattacagaagccaattccagtcccagttccacttctatagtttatcctgac
aatgtcttacctgctctgcagaccattagctttgatggctgtgacatagaaggacagcat
ctcactcctctgacatttcccatccagaaatgtcttgccttggaggatttaaagttttct
cagcttaaagtggaccgaaaaggcgcagagtttttgtctgcagtcattccgtccttaccg
aatctcaggagcctcactcttgatttgaaagcagcagctgaggatgatctggaaactctt
gctgaagcattaccaagcacttcagtgtttgagagtctgagtttgtcccagcttgtttta
ggtgaccgtggagctgcaatattagggagagctcttcaaagtgtgccaaatctgaaatca
tttaatctgtcccagtgctctggctggacaacagctcgagggtgtgacctggtcaaagga
ctggcgcaatgcgtcttactggcagagatacgactggactctttggtacttgatgaggag
gggataaccatcctaacgcaaggcttcagccatttgtactcccttcgaaggctcagcttg
aacaacattagagtggtgacatcagacacgtttgtgaatggcactggcataatttgtcta
cttgcctcttttaaggggtttagacagatggaagagattgagttggaaagttggcgaatg
ggagatggtggtacttatgagcttgtgaaatacatcccttcatggactaaactactaaag
ctgagtctgtcagacaacagtataagtgaccaggctggagagaagctactggcggctcta
tcccattgcagagctcttcagaaactacagctgtccaaaaacaagcttggtcaggccagt
gctgctaaactatctcaagtccttccgttactgcctcagctttcagaactcaatttgtca
gagaatcagtttgacccacaaggatccaaggctctttgtgaaggtctcataagcatgaag
gcactgaaaatactacatttgacttcatttgggagttcagatctggctgatgtggcatca
tccctcaaacactgtccatccatagaagatgtcagcttgtcatggaatggatgtggtgac
agtcttgcatcgacactggctaagatcctgcccctgtgtacaaagctgaaaagactcgac
ctggaggccaataacataaccaagactggagccacagcgatagccaaatgcctcccatca
tgcccctccattgaagtaataagactctggaggaatccaattttcaaatgggatgacaat
ccaaaagatcagaggctgaacttttcatcagtttag
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integrated database retrieval system
