Pimephales promelas (fathead minnow): 120493962
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Entry
120493962 CDS
T08155
Symbol
cpsf3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120493962 (cpsf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprm03021
]
120493962 (cpsf3)
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120493962 (cpsf3)
Transcription machinery [BR:
pprm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120493962 (cpsf3)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120493962 (cpsf3)
U7-dependent histone pre-mRNA processing factors
120493962 (cpsf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
120493962
NCBI-ProteinID:
XP_039548918
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MATKRKADVTVPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPSVKPDILITESTYGTHIHEKREEREARFCNTVHDIVNRE
GRCLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKAININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEIATMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KCAQGQRVSGILVKKNFSYHILSPSDLSNYTELAMSTVKQTQAIPFTGPFPLLLNQLRHL
TGDVEEIETSEKSTLRVFNSITVVHDQNLVVLEWFANPLNDMYADAVTTVVLEVQSNPKA
QKVVQPQEKKMDVDVYQSRLLKMFQDMFGEECVDFKDKNCLAVSVDEKTAYINLETRTVE
YEEADSEDDSLREMVELAVQRLYEAMNPVM
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggctacaaaacgtaaagcggatgtaacagtgcctgcagaagaaagcgaccagcttctc
attagaccactaggagctggtcaagaggtgggcaggtcttgtatcatcctagagttcaag
ggccgtaaaatcatgctggactgtggcatccaccctggattggagggcatggatgcattg
ccttacattgatttgatagacccagctgagattgacctgctcctcatcagccattttcac
ttggatcattgtggagccttgccatggtttctacagaagacaagtttcaaagggaggact
ttcatgactcatgccaccaaagccatttaccgctggttgctttcagactatgtgaaagtc
agcaacatctcagcggatgacatgctgtacaccgagaccgatttagaagaaagcatggat
aagatcgagaccatcaacttccatgaagtgaaagaggtggcgggcatcaagttttggtgc
taccatgcaggtcatgttttgggagcagccatgttcatgattgagattgcaggagtgaag
ctactgtacaccggagatttctcccgtcaagaagacagacatctcatggcagctgagatc
cccagcgtaaaaccagacattctcatcacagagtccacatatggcacacacatccatgag
aagagagaggagagagaggctcgtttctgtaacacagtccatgacatagtgaaccgcgag
ggccgctgtctcatccctgtgtttgctttgggtcgggcccaggaactgctgctcattcta
gatgaatactggcagaatcaccctgaactccatgacattcctatctactatgcctcctcc
ctggctaagaagtgcatggctgtctaccaaacctacgtgaacgccatgaacgacaagatc
cgcaaggccatcaacattaacaacccttttgtcttcaagcacatcagcaatctcaagagc
atggaccacttcgacgacatcggccctagtgtggtgatggcatcccctggtatgatgcag
agcggtctctccagggagcttttcgagagttggtgcactgacaagagaaatggcgtcatc
atcgccggttattgcgtggaaggaactctcgccaagcatatcatgtctgagccggaggag
atcgccaccatgtcaggacagaagcttcccctgaagatgtccgtggactacatctcgttc
tctgctcatacggattaccagcagaccagcgagttcatccgagctctgaaacctcctcat
gtgatcctggttcacggagagcagaatgagatggctcgattgaaagccgccctgattcga
gagtacgaggacaacgatgaggttcacatcgaggtgcacaaccctcgtaacactgaggcc
gtcacgctgaacttcagaggagagaaactggctaaggtgatgggctctcttgcggataag
aagtgtgcacaaggtcagagggtctctggcatcctggtgaaaaagaacttcagttatcac
atcctctccccctctgacctctccaattacactgagctggccatgagcacagtgaaacag
actcaagccattccattcactggcccctttcccctgcttttgaatcagctacgccacctg
acaggggatgtagaggagattgagacgtcagagaagagcacactaagagtgtttaacagc
atcacagtggttcatgatcaaaacttggtcgtgttggagtggtttgccaaccctctgaat
gacatgtacgctgatgccgtgaccacagtggtgctggaggtgcagtcaaaccctaaagct
cagaaagttgttcagccccaagaaaagaagatggatgtggatgtttaccagagcagatta
ctgaaaatgttccaagacatgtttggagaggagtgtgtcgactttaaagacaagaactgt
ctcgctgtaagtgtagatgagaagactgcctacatcaacctggaaacccgaaccgtggag
tatgaagaagctgattctgaagatgattctctcagagaaatggtggagctcgctgtgcag
aggctgtatgaagccatgaaccctgtcatgtga
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