Pimephales promelas (fathead minnow): 120494065
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Entry
120494065 CDS
T08155
Symbol
ddx27
Name
(RefSeq) probable ATP-dependent RNA helicase DDX27
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120494065 (ddx27)
03009 Ribosome biogenesis [BR:
pprm03009
]
120494065 (ddx27)
Enzymes [BR:
pprm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120494065 (ddx27)
Spliceosome [BR:
pprm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120494065 (ddx27)
Ribosome biogenesis [BR:
pprm03009
]
Eukaryotic type
Pre-60S particles
Helicases
120494065 (ddx27)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
BSP_II
AAA_22
Cas3-like_C_2
Zip
PRK
Motif
Other DBs
NCBI-GeneID:
120494065
NCBI-ProteinID:
XP_039549094
LinkDB
All DBs
Position
Unknown
AA seq
773 aa
AA seq
DB search
MFSDMDLIRTIDDDVEVPDEPDSASDDDDDQPIVLSKEKRALKGRTGDFNAGFEFGERDG
LYSGDWAMDDVMAQLKKRKAATTLDEKIEKVRKKRKIEEKTQKNKKTEAPASKPEQDDDE
DEDEDDDEEDNDEEVDENDNNSKVSAGDDDDDDEVEEDEFSSGDEEVLKKADTVREKQKK
GKKKIPEAFFEDASQYDDNLTFPDMNLSRPLLKAVTTMGFKQPTPIQKACVPVGLLGKDI
CACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQLAQFTSI
STCLAVGGLDLKSQEAALRAGPDVLIATPGRLIDHLHNTPSFELSQIEILILDEADRMLD
EYFEEQMKEIIRMCSYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQE
FVRIRPNREGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLS
QTQRLESLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPNTAKHYVHRVGRTARAG
KVGRSVSLVGETERKMLKEIVKQAKAPVKARVIPQEVILKFRDLIEKLEKDVYAVLSLEK
EEKAMAHSEAQISLAQKRITQSADEKQPPRTWFQTHEERKKDRMAKVLQDFDFALRGKKK
RAEFLKQGKRKELTAEERAQFEVLKSQMYAERAAKRDRKPKRARVVPEDEPVQKAKKPNK
SRKKSVFDKELTNTSKKTLKQYRAGPSFEDRKRLGLPNKKGGRFKSKSKFRRR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgttttctgatatggatttgatcagaactattgatgatgatgttgaagtgccagatgag
ccggattcagcgtcggacgatgatgatgatcagcccatcgtgttgagcaaggagaaacgc
gcgctgaagggccgcacaggagacttcaacgctggtttcgagtttggcgagcgggatggc
ctgtacagcggagactgggcgatggatgacgtgatggctcagctgaagaagaggaaagcg
gccacgactctggacgagaagatcgagaaagtgcggaaaaagcgcaaaattgaggagaaa
actcaaaaaaacaagaaaacagaagctcccgcctctaaaccagagcaagatgatgatgag
gatgaagatgaggatgatgatgaagaagataatgatgaagaagtggatgaaaatgacaat
aacagtaaagtatctgctggagatgatgatgatgatgatgaggtggaggaagacgagttc
tcctcaggtgatgaagaggtgctgaaaaaagccgacactgtgagagaaaaacagaagaag
ggcaagaagaaaatccctgaagccttttttgaagacgcttcccagtatgacgacaatctc
accttccctgatatgaatctatccagacccttactcaaggccgtcactactatgggcttt
aagcagcccactcctattcagaaagcctgcgtccctgtggggcttctgggaaaagacatc
tgtgcatgtgccgccactggcactggaaagactgcagccttcatgttgccggttctggag
cgtctgatctacaagccgagagagactcaggtgacgcgagtgctggttctggtgccgacc
cgagagctgggcattcaggtgcacaccgtggcccgtcagctggcccagttcaccagcatc
agcacgtgtctggccgtgggtgggctggacctgaagtctcaggaggcggcgctgagagcg
ggtccagatgtcctgatcgccacaccgggacgactgatcgaccacttgcacaacacgccg
tcgttcgagctcagtcagatcgagatcctcatcttagacgaggccgacaggatgctggac
gagtactttgaggagcagatgaaggagatcatcaggatgtgttcctatcagagacagacc
atgctgttctcagccaccatgagtgaggaggtgaaggatctggcgtcggtgtctctgaag
cagccggtgaggatcttcgtgaacagtaacacagacgtggcgccatatctcagacaagag
tttgtgaggatcagacccaacagagaaggagaccgagaggctattgttgcagctctcctc
accaggacgtttcaggatcacgtgatgctcttcactcagaccaagaaacaggctcatcgc
atgcacattctgctgggtctgatggggttaaaggtcggcgagcttcatggaaacctgtcg
cagacgcagagattggagagtctgaggcgttttaaggatgagcagatcgatattctggtg
gccacagacgtcgctgccagaggactggatatagacggggtgaaaactgtgatcaacttc
accatgcccaacacggcgaagcattacgtgcacagggtcggcaggacggcccgcgcgggt
aaagtgggccgctccgtgtctctcgtgggcgagaccgagaggaagatgctgaaagagatc
gtgaaacaagccaaagcgcccgtcaaagctcgtgtcattcctcaagaggtcattctgaag
tttcgtgatctgattgagaagttggagaaggacgtgtacgcagtgttaagcctggagaag
gaggaaaaggcaatggctcattcagaagcgcagatcagtttagctcagaagaggataaca
cagagcgcagacgagaaacagccgcccagaacctggttccagacacacgaggagcggaag
aaagatcgcatggcgaaggtgctacaggattttgattttgctctgagaggaaagaaaaaa
cgtgcagagttcctgaaacagggcaagaggaaagagttaacggctgaggagagagctcag
ttcgaggtgctgaagtctcagatgtacgctgaacgagcagctaaacgcgatcgcaagccg
aagcgagccagagttgtcccagaagacgaacccgttcagaaagctaaaaaaccaaacaaa
tctaggaagaagtctgtgtttgacaaggagctaacgaacaccagcaagaaaacgctgaag
cagtacagagcagggccgtccttcgaggacagaaagagactcggccttccgaacaagaag
ggaggacgcttcaagtcaaagtccaagttcaggagaaggtga
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