Pimephales promelas (fathead minnow): 120494261
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Entry
120494261 CDS
T08155
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03030
DNA replication
pprm03410
Base excision repair
pprm03420
Nucleotide excision repair
pprm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120494261 (rfc1)
03410 Base excision repair
120494261 (rfc1)
03420 Nucleotide excision repair
120494261 (rfc1)
03430 Mismatch repair
120494261 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pprm03032
]
120494261 (rfc1)
03400 DNA repair and recombination proteins [BR:
pprm03400
]
120494261 (rfc1)
DNA replication proteins [BR:
pprm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120494261 (rfc1)
DNA repair and recombination proteins [BR:
pprm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120494261 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_7
AAA_5
AAA_30
AAA_33
Rad17
RuvB_N
AAA_17
AAA_16
AAA_14
BRCT_2
AAA_19
nSTAND3
AAA_18
RNA_helicase
NTPase_1
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
120494261
NCBI-ProteinID:
XP_039549429
LinkDB
All DBs
Position
Unknown
AA seq
1132 aa
AA seq
DB search
MDIRRFFASTKPSNESTSTDEEQKKKQKSKTKIKSPKSDEKPTGKRKKRVIIDSDSEEDK
KEKKTKKSTKETPAPTVKKQPVTFVSDSDSDDTFVTLKPHKPKENGTAKGKEVSNSGKAK
QAKVSPKRSPIKSPNTTSKPSVKSSQPIVSTKVTPTPPKLKPTTVMAFFGSSSVQRSEKK
MVASTSTKRKAPTQEIDESLSDEAIAKELQMDEEIELEKQIHDDEEFAKTLAMLDEAPLP
KKARVDSISPSKSSCQAVASDTKPKKDPSPKTSPVKTSSKLAQMKKRQDEEDEQRKRGEK
KMKISPKKEPISPACSEQAATPKTGSVSTGMTKSRSISTPKSEPSKTSPTKPENTSPEDL
EKKRANSSAYRNFLNREGPRALGSKEIPQGAENCLEGCVFVLTGVLESMERDDAKSLIER
YGGKVTGNVSRKTNYLVLGRDSGVSKTEKAESFGTKIINEDELLELIRTKPGKKSKYEIA
AEAENKSSKTRTPDSRGKPTPPAKKATPQGPSPNKRSPSERKSKPGSASKSGTREASRSE
VKKSLSYDQTKTASPVSHSTPQNDGSSLLWVDKYRPRSLKNLIGQQGDQSCANKLLRWLQ
HWHKHHSGNTKAPPKFGKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCEELGYSYVEMN
ASCTRSKNSLKEVIAESLNNTSIKNFYTGASQTVSSKHVLIMDEVDGMAGNEDRGGIQEM
IGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKGAMMSIAFKEGLKIPP
PALNEVILASNQDIRQILHNLCMWSAKDKVMTYDQAKADAKNAKKDMKLGPFDVCRKVFA
SGEETAHMSLIDKSDLFFHDYSLAPLFVQENYLHVRPAAAGGNLKNHLVLLSKTADSICD
GDLVDKQIRSKQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFSSAGKHSRIIQ
ELASHMSLKTLSSKEAINLDYLPYLRSAILEPLQSQGSEGANQSVKLMDDYDIIKEDVDN
MMEISTWGGQSDPYSKLDSKVKAAFTRAYNKESHLTPYSLQVVKKSRKGAVDPELVGELD
DESQVQEEEENDGLTRDAMIKQKKAKPAKDVKQEKPGASGKGKGRGKGKAKN
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaggttttttgcatccaccaaaccttcaaatgaaagcaccagcactgat
gaagaacagaagaagaaacagaaatcaaaaaccaagatcaaaagtcccaaatctgatgag
aaaccaactggaaaacgaaagaaaagagtcataattgattcagactctgaggaagacaag
aaggagaagaagaccaaaaagagcactaaagagacacctgcacccacagtgaagaaacaa
ccagtaactttcgtttctgattctgattcagatgacacatttgtgactctgaaaccgcac
aaacctaaagaaaatggaactgctaaaggcaaggaggtctcaaattcaggaaaagcaaaa
caagcaaaagtttcccctaaaagatctccaatcaaatccccaaacacaacctcaaagcca
agtgtgaagagttctcagcccattgtatcaacaaaggtcacaccaaccccacctaaactg
aagcctaccacagtaatggcattctttgggagctcaagtgttcagaggtcagagaagaaa
atggtggccagtaccagcaccaaaaggaaagcacccacacaggaaatagatgagtcgctc
agtgatgaagccattgcaaaagaacttcagatggatgaagaaattgagttggaaaagcag
attcatgacgatgaggaatttgcaaaaacattagccatgctggatgaagctcccttaccg
aaaaaggctcgggtagactctatctccccttccaagagcagctgtcaggcagttgcctca
gacaccaaacctaaaaaggacccatcgcctaaaacaagtcctgtgaaaaccagctccaaa
ctggctcagatgaaaaaacgtcaggatgaagaggatgagcaaaggaaaaggggcgaaaag
aaaatgaagatctcccctaaaaaagagcccatctcaccagcttgctcagagcaggcagct
acgcccaaaacaggaagtgtttccacgggaatgacaaaatcaagaagtatttccacacct
aaaagtgaacccagtaaaacttcaccgacaaaaccagagaatacaagtcctgaggatctt
gagaaaaaacgagcaaattcatcagcctaccgtaacttcttgaacagagaaggaccacga
gctctggggtctaaagagataccacagggagcagagaactgcctggagggttgtgtgttt
gtgttgactggtgtgttagagtctatggagagggatgatgctaagtctctaatagagcga
tatggcggcaaggtcacgggaaacgtcagccgtaaaaccaattaccttgttctgggacga
gacagtggagtttcaaagactgaaaaggcggagagttttggcactaagatcattaatgaa
gatgagttgttggaactcataagaaccaaaccaggcaagaagtctaaatacgagattgcg
gcagaggcagagaataaatcctctaagacaaggactccagactctagaggcaagcccact
cctccagccaagaaggccacaccacaagggcccagtcccaacaagagaagcccttcagag
aggaagtctaagcctggctctgcctctaaatctggcacacgtgaggcctctcgttcagag
gtcaaaaagagtttgagctatgatcaaaccaagacagcatcccctgtatcccactctacc
ccacagaatgatgggagcagcctgttgtgggtggataaataccgcccccgcagtctgaag
aacttgattggacagcagggggatcagagttgtgccaacaagcttctgcgctggttacag
cactggcataaacatcacagtggcaatacaaaagcaccacccaaatttggtaagtttggg
agtaaagatgatggttctggatttaaggctgcattgctatctggtcctcctggtgttggg
aagaccactactgctgctctcgtctgtgaggagttgggttacagctacgtggagatgaat
gcgagctgcacccgcagtaagaacagcttaaaggaagtgatcgctgaatcactcaacaac
accagcattaagaacttctataccggtgcatctcagacagtgagcagtaaacatgtcctc
ataatggatgaggtggacggaatggcaggaaatgaagacagaggaggaatacaggagatg
attggtctgataaagcagtcaaagattcccatcatctgcatgtgcaatgaccgcaatcat
cagaagatccgctcgctggccaactactgctacgacctgcggtttcagagaccccgtgtt
gagcagatcaagggggctatgatgtctatagctttcaaagagggtctgaagatcccaccc
ccagcactgaatgaagtaatcctggcgtccaatcaggatattcgacagatcctgcacaat
ctgtgcatgtggtcggctaaagacaaagtcatgacttatgaccaggccaaagctgatgct
aagaacgctaagaaagacatgaaactgggtccatttgatgtgtgccggaaggtgtttgct
tcaggagaggaaaccgcccacatgtctttgattgacaaatcagaccttttctttcatgac
tactctttagcaccactatttgtccaagaaaactacctgcatgtccgaccagctgccgca
gggggaaatctgaagaatcatctggtgttgttgagtaaaacagcagacagcatttgcgat
ggagatttagtggacaaacagattcgttccaaacagacctggtctctgctccctacacag
gcaatttatgcaagcgtgttgccaggggaactgatgcgtggctatatgagtcagtttcca
acctttcccagctggttgggcaagttctcatcagctggcaaacacagccgcatcatacag
gagctggcttcacacatgagccttaagacgttaagtagtaaggaagcaataaatctggat
tacctgccatatttgcgctccgcaatattagagcctcttcagtcccaaggttcagaagga
gccaatcagagcgtgaagctcatggatgattatgacatcattaaagaggatgttgataac
atgatggagatcagcacatggggtggacagtcggatccttattctaagctagactccaag
gtgaaagctgcatttacaagagcctacaataaggaatcccatcttacgccgtactcctta
caagtggttaagaaaagccgtaaaggtgctgttgaccctgagcttgtaggagagcttgac
gatgaatctcaggtccaggaagaggaagaaaacgatgggcttaccagagatgcaatgatc
aagcagaagaaagccaaaccagcaaaagacgtcaagcaagagaaaccaggggcttctggg
aaggggaaaggcaggggtaaaggaaaggccaagaactga
DBGET
integrated database retrieval system
