Pimephales promelas (fathead minnow): 120494496
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Entry
120494496 CDS
T08155
Symbol
slit2
Name
(RefSeq) slit homolog 2 protein isoform X1
KO
K06839
slit 2
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pprm00536
]
120494496 (slit2)
Glycosaminoglycan binding proteins [BR:
pprm00536
]
Heparan sulfate / Heparin
Axon guidance molecules
120494496 (slit2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
EGF
LRR_5
Laminin_G_2
Laminin_G_1
LRRNT
LRR_9
LRRCT
LRR_1
hEGF
EGF_TEN
LRR_14
LRR_EndoS
EGF_DL_JAG
EGF_Teneurin
JAG1-like_EGF2
EGF_3
Laminin_G_3
EGF_C8A_B_C6
Motif
Other DBs
NCBI-GeneID:
120494496
NCBI-ProteinID:
XP_039549603
LinkDB
All DBs
Position
Unknown
AA seq
1536 aa
AA seq
DB search
MFVLEAVVLCALLGGAGAQPCPSQCSCSGTAVDCHGQSLQSVPRNIPRNAERLDLNANNL
TKITKADFAGLRNLRVLQLMENKISSIERGAFQELKELERLRLNRNNLQVLPELLFLGTT
KLFRLDLSENQIQGIPRKAFRGATEIKNLQLDYNQISCIEDGAFRALRDLEVLTLNNNKI
SRLSVASFNHMPKLRTFRLHSNNLLCDCHVAWLSDWLRQRPRLGLYTQCMAPPSLRGHNI
AEVQKKEFTCTDFSEGPQSHSSCSVLQCPELCTCSNNIVDCRGKGLTEIPTNLPETITEI
RLEQNSISIIPPGAFSPYKRLRRIDLSNNQITELAADSFQGLRSLNSLVLYGNKITELPK
GVFDGLFSVQLLLLNANKINCLRVDAFQDLQKLNVLSLYGNKLQTIAKGTFSSLRTIQTL
HLAQNPFMCDCHLKWLADYLQDNPIETSGARCTSPRRLANKRIGQIKSKKFRCSGVEDYR
SKLGGDCFADLACPEKCRCEGTTVDCSGQKLNKFPDHIPQYTAELRLNNNEFTVLEATGI
FKKLPQLRKINLSNNKITDIEEGTFEGASGVNELILTSNRLEGVHYSMLKGLSGLRTLML
RSNKISCVNNGSFTGLSSVRLLSLYDNQITSMSPGAFDTLHSLSTLNLLANPFNCNCHLA
WLGEWLRKKRIVTGNPRCQSPYFLQEIPIQDVAIPDFACEDGNDESSCVPLARCPAECSC
LDTVVRCSNKALKVLPKGIPKDVTELYLDGNQFTQVPLELSNYKHLTLIDMSNNQISTLS
NHSFSNMSELLTLILSYNRLRCIPVKAFDGLKSLRLLSLHGNDIAVIPDGAFKDLSSLSH
LALGANPLYCDCHMQWLSDWVKSGYKEPGIARCTGPGEMTDKLLLTTPSKKFTCTEVLGT
CGLPVPGPVDVNILAKCNPCLSNPCKNDGTCSNHPVDFYRCTCPYGFKGQDCEEPIHACI
GNPCQNGGTCHLKDGEQNTHWCVCPEGFEGDECEINIDDCEDNDCENNSTCVDGINNYTC
HCSPEYTAANNNEVEKGELCEDKMDFCASELNLCQHDSKCIQTAKGFMCECTPGYTGEHC
EVDFDDCEDNKCKNGAQCIDAVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDHYDCANG
AQCVVKDTDPVCQCLHGYQGVHCERLVSVNFINRESFLQIPSNLITEQANISLQIATDED
NGVLLYKGDNEHIAVELYRGRLRVSYDSGSYPPSAIYSVETINDGSFHVVELVAKDQSLS
LSIDGGSPKSINTASSPSPAPSPAPLYLGGIPQQSGLASLRQSSGRNGSSFHGCIRNLYI
NDQLQDLTQFLLQEGVVPGCQPCQRSVCAHGQCHATGQSSFSCECEAGWTGPLCDQQINN
PCDGNKCIHGSCLPINSYSYSCRCHPGFAGVLCDEEEQLSPCQYIACKHGRCRVSGLGKA
YCECNSGYTGQSCDREMACRGERVRDHYQTQQGYAACQSTEKVSRLECRGSCGDGTSCCA
PLRSKRRKYTFQCTDGSSFVQEVEKVVKCGCTKCPS
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtcctggaagcagtggtgctctgtgcattgctcggcggggctggggctcagccg
tgcccgtctcagtgctcctgcagcgggacagcggtggactgccacgggcagagtctgcag
agcgtgccgcggaacattccgcgcaacgcagagcgacttgacctgaatgcaaacaatctg
actaaaatcactaaagcagatttcgcgggactgaggaacctcagagttctgcagctaatg
gagaacaagatcagttctattgagagaggggcatttcaggagctgaaagagctggaaaga
ctgcgtctcaacaggaataatcttcaggttcttccggagttgctgtttctgggcacgact
aaactcttcagacttgacctgagtgaaaatcaaatccaggggattcccagaaaagcgttc
agaggagctactgagatcaaaaacctgcagctggactacaatcaaatttcctgcattgaa
gatggagcgttcagagctctgcgggacctagaagtactcacactgaataacaacaaaatc
tctcgcttgtctgtggccagttttaaccacatgcccaagctcagaacatttcgcctccac
tctaataatctgctatgtgattgccatgtggcctggctctctgattggctgagacaaagg
ccccgccttggcctctacacacagtgtatggccccaccctccctgaggggccacaacatt
gctgaggttcagaagaaagagtttacctgtacagacttcagtgaagggccccagtcacac
tcgtcctgtagtgttctgcagtgtcctgagctatgcacctgcagtaataatatagtggac
tgccgagggaaaggactgactgaaatacctaccaacctgccagaaaccatcactgagatt
cgactggagcagaactccatcagcattattccgccaggagcattctcaccttacaagaga
ctgcggagaatagatttgagtaataatcaaataactgaattggctgcagactcctttcaa
ggcctccgatctttgaattctctggttttatatgggaataaaatcactgaacttcccaaa
ggtgtttttgatggactattctcagtgcagctactattgctaaatgcgaacaagatcaat
tgtttgcgtgtagatgctttccaagacctgcagaaactaaatgtcctgtcgctttatggc
aacaaactccagaccattgcaaagggaaccttctcttctctccgaaccatccaaactctt
catctggcccagaaccccttcatgtgtgactgccatttgaagtggttagctgactacctg
caagacaacccgattgagaccagcggagctcgatgcaccagtccccgccgccttgctaac
aaacgcatcggccagatcaagagcaaaaagttccgctgttcaggcgtggaggactaccga
tcgaaactaggtggggattgcttcgctgacctggcctgcccagagaaatgtcgctgtgaa
ggaaccacagtggactgctctggacaaaagctcaacaagttcccagaccacatacctcaa
tatacagcagaactccgattgaacaataatgaatttacagtgctggaggctacaggaatc
tttaagaagcttcctcaactgcgcaaaataaaccttagtaacaataagatcacagatatt
gaggagggcacatttgagggtgccagtggagtgaatgagctcattctgaccagcaaccgc
ttagagggcgtccactacagcatgctgaaaggcctcagcggtctccgcacattgatgttg
aggagtaacaagataagctgcgtcaataacggtagttttactggtctgagctcggtgagg
ctgctctccctctatgataaccaaatcacctccatgtccccgggagcctttgacactcta
cattccctctccacgctgaacttgctggccaatccatttaactgtaactgtcatctggct
tggttgggtgaatggctccgtaagaaacggattgtcacgggcaacccccgctgtcagagc
ccctactttcttcaggagatccctattcaagatgtagccataccagattttgcctgcgaa
gacggtaatgatgaaagtagctgtgtccccctggctcgctgtcctgccgagtgttcgtgt
ttggatacggtggtgcgctgcagtaataaagcactaaaggttttacccaagggcattcct
aaagacgtaacagaactctatctcgatggcaaccagttcacgcaagtccctctggaacta
tccaattataaacacctcactctcattgatatgagtaataaccagatcagcacattgtcc
aaccacagcttcagtaacatgtccgagcttctcaccctaattttaagctacaacagactg
aggtgtattcctgtaaaagctttcgacggtctcaaatctctgcgcctgttgtctcttcat
ggtaatgatattgctgtgatcccagatggagctttcaaagatctgtcctcgctctcccac
ctggctctgggagcaaaccctctgtactgtgattgtcacatgcagtggctctctgactgg
gttaagagcggctacaaggagcctggaatcgcgcgctgtactggtcctggagagatgacc
gacaaactactgctgactacaccctccaagaaattcacatgcacagaggtgctggggact
tgtggtttgccggtaccaggtccagtggatgtgaacattttggctaaatgtaacccttgt
ttatccaatccatgcaagaatgatggaacctgcagtaaccatcccgttgatttttacaga
tgcacctgtccttatggttttaagggtcaagactgtgaggaaccaattcatgcgtgcatc
ggtaacccctgtcagaatggaggcacctgtcatctaaaggatggagagcaaaacactcac
tggtgtgtgtgtccagaaggatttgagggcgacgaatgtgagataaatattgatgactgt
gaagataatgactgtgagaataactccacgtgtgtggatggtatcaacaactacacctgt
cactgctcacctgaatacacagctgctaataataatgaggtggagaaaggggagctgtgc
gaagataagatggatttctgcgcttcagagttgaacctgtgtcagcacgactcaaaatgt
attcagaccgctaagggcttcatgtgcgagtgtactccaggttacaccggggagcactgc
gaggtggattttgatgattgtgaagataataagtgtaaaaacggggctcagtgtattgat
gctgtgaatggttatacatgtgtgtgcccagaaggatacagtgggctgttctgcgagttc
tctcctccaatggtcctgccgagaacaagtccgtgtgaccactatgactgtgccaatggt
gcacagtgtgttgtcaaggacacagatcctgtgtgtcagtgtctccatggttaccagggc
gtgcactgtgagaggctggtcagcgtcaacttcatcaatagagaatcgttcctgcagatc
ccctccaacctcattacagaacaggccaatatatcactacagatcgccacagatgaggat
aatggggtgttgctgtataaaggagataatgaacacatcgctgtggagctctacagaggc
agactgagagtcagttatgattctggatcatatcctccatctgccatctacagtgttgag
acgataaatgatggcagttttcatgtagtggagctggtggcaaaggatcagtctctgtca
ctgtctattgatggaggaagccccaaatccatcaacactgccagcagtcccagcccagca
cctagccctgctccgctttaccttgggggaatccctcagcagtctggattggcctcattg
cgtcagagctccgggaggaacggctctagtttccacggatgtatccggaacctctacatt
aatgatcagctccaggacctcactcagttcctgctgcaggagggggtggtgcccggctgc
cagccctgccagagaagtgtgtgcgctcacgggcagtgccatgccaccggacaatcctcc
ttcagctgtgagtgtgaggccggatggactggccctctgtgtgaccagcagatcaacaac
ccatgtgacgggaacaagtgtatccacggttcctgtttgcccataaactcgtactcgtac
agctgtcgctgtcatccaggctttgcaggtgtattgtgtgatgaagaggagcagttgagt
ccctgtcagtacatagcatgtaaacacgggcgctgtcgcgtgtctgggctggggaaagcc
tactgcgagtgcaacagcggctacacggggcaaagctgtgatagagagatggcgtgtcgg
ggggaacgggtccgagatcactatcagacgcagcagggctacgcagcgtgccaaagcaca
gagaaggtctcccgtttagagtgtcggggcagctgtggggacgggacctcctgctgcgcc
cctctccgcagcaaacgcaggaaatacaccttccaatgcacagacggatcctcttttgta
caggaggtggaaaaggtcgtcaagtgtggctgcacaaaatgtccatcctaa
DBGET
integrated database retrieval system
