Pimephales promelas (fathead minnow): 120494861
Help
Entry
120494861 CDS
T08155
Symbol
atrx
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
120494861 (atrx)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pprm03000
]
120494861 (atrx)
03036 Chromosome and associated proteins [BR:
pprm03036
]
120494861 (atrx)
Transcription factors [BR:
pprm03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
120494861 (atrx)
Chromosome and associated proteins [BR:
pprm03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
120494861 (atrx)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
ADD_ATRX
Helicase_C
Motif
Other DBs
NCBI-GeneID:
120494861
NCBI-ProteinID:
XP_039550134
LinkDB
All DBs
Position
Unknown
AA seq
2296 aa
AA seq
DB search
MRSQVYKGDEMTTDICRSSKLNTLVTKLHEFLGNSPDDESIGSQDISNGKMASSDLNIPD
EKMNEPGCSSEMTKPSSSRSKRKPSFVTKHTAVDEPECANESGGEHCTDDSMQSGLDINK
LPQGTVVVKPEPVANEAKDEFRGPEFRNRGSKVKEDAPRKRSDEKLQEIFNCTACGQQVN
HFQRDSIFQHPALHVLICKSCFKYYMSDDISKDDEGMDEQCRWCAEGGNLICCDYCSNAF
CKKCILRNLGRKELSEIMNEESKWHCFVCCPEPLKDYVKTCEKVLLSLESRYKKPRGEND
KTKREDRKHKHTKREKTAVNGQDYASDGAGTVTFSCKTLKVPKELVKKTKKLIETTNGLN
RTFVQFLQHTSNGPDVKAVTYRHLKAFKSVLADLKKAHTALEDSLEKEFEERGLKFQNGE
EQRPADSQTAGKMVVNSNHADPTTVSDDGLDCPTKDYNPVVEEDNQQESNSADVEMKDSL
PLSPEEAQDWSEEGDRPEERPQSEERGRSGEREGSGEREGSEEKVRSGKRGRSGKIGPSA
EREDSGEREGSGEREGSEDREGSEDGEGSEEKGRSGKRGRSGEREGSGKRGRSGKRGPSA
EREGSEEREGSEEKGRSGKRGRSGKIGPSAEREDSGEREGSEEREGSEEKGRSGKRGRSG
KIGRSGEREGSEEKVRSGKRGRSGKIGPSAEREDSGESEGSEEKGRSGKRGRSGKRGQSE
ERSQSEESEAKDQEMADNPDFEDSSVPAGEASLDKDIVSIPPSVPEELFEMVESLAVKKE
EDAGNSTDSSDGKSTTKAEVVESNKSLAKLGKKLVVKLTPVPLKITIKRDKSSERSPSEE
MDGETSQKEGQDSRRSPRMKTTPLRKSPEAKSKRKARSSKAKEERSDPVEEQCDSDSDEV
PEVLQTAALEASSDESETENCEKASGKRTKKKLVTRSSAKGKPKRKLDMGSSDSDQSDKS
STAKKSRTKKKKGRESDSSNHNSDLERQMKNLARMGSGKKKSKGVKKEEEESSKEGKKTP
KRSFERKRRSQREKAKTKEESSSSDEEEEEEEKEADNSGEDSDQQKIKPILESVMASIDG
FHQSSGDEVELKAESSQVVDDDDDPENRIAKRMLLAQIKANYSSGADSSSDDENADKEDR
NSRKRGKDGAKEQDGSEKEDEDETSDSGSDVDVKKGGQRHRLLRKKLTLSEGDSDEETPV
KKKKETKKRGRRKVDSDDSADSDFEHSLSGSSDASGLSEAVSEEEDENKCNKRKTRSSKR
AGKDGERSYQKEKKKRRRIKVQDSSSSAKSGEEGDGDGDGDEEGDDKGTPKNRKKIRKII
KDDLLRTETRDALKEEEERRKRIAERERLREKLRETIVVEESSQIACPITTKLVLDEDEE
TKEPLVQVHRNLVTKLKPHQVDGVQFMWDCCCESVKKVEKSSGSGCILAHCMGLGKTLQV
VTFLHTLLLCEKLNFSTALVVCPLNTVLNWLNEFEKWQEGLKDEESLEVNELATVKRPQE
RAYALQRWQEDGGVMIIGYEMYRNLTQGRNIKSKKLKETFQKTLVDPGPDFVICDEGHIL
KNEASAVSKAMNSIRTRRRVVLTGTPLQNNLIEYHCMVTFIKENLLGSVKEFRNRFINPI
QNGQCADSTLVDVRVMKKRAHILYEMLAGCVQRRDYTALTKFLPPKHEYVLEIRLTPIQC
KLYRYYLDHFTGVGSALEGGRGRAGTKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDE
DSMEEFIASETEESSMSLTSEDEKPKRKKKRGKGKDKGSDKSDSDDLEVIKEWNTSSRGG
NPEGRNRAEPVEEVRAPSNSGPGSPSPDWYKEFVTEADSEVLEHSGKMVVLFEILRMAED
VEDKVLVFSQSLISLDLIEDFLELAGRAKEEGKVSPYKGEGKWFRNLDYYRLDGSTNALT
RKKWAEEFNDTSNVRGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYDVQSIFRVYRF
GQVKTVFVYRFLAQGTMEDKIYDRQVTKQSLSFRVVDQQQIERHFTMNELTELYTFEPDQ
LDDPSEKKSKRATPMLPKDPFLAELLHSYKDQIVGYHEHDSLLDHKEEEALSEEDRKAAW
TEYEAEKKGLSMRFNQQAYPQMGVGASNSYFPFNVAALASMSNQQLEDLINQGRQKVLEA
TSALKSVPREPLEDIIAQVWKENPSLPEAQVQSMALGRQAGYELEIKHREAIYRDVLSKQ
QTLMMYVQKVVANRKVQEQQMALARQGMLLNQLAMQNGLSAPMNQMDLLGLYQQLGALQG
LPSSQLGKNPGPSKGL
NT seq
6891 nt
NT seq
+upstream
nt +downstream
nt
atgaggtcgcaggtttataaaggggacgaaatgaccaccgacatctgcaggtccagtaag
ctgaatacattggtgactaaacttcatgagttcttgggtaattctccggacgacgaaagc
attggttctcaagacatttccaatggtaaaatggcatccagtgacttaaacatccctgat
gagaaaatgaatgagcccggttgctcctccgaaatgaccaaaccctcatcttcacgctca
aagagaaaaccttcatttgtgaccaagcacaccgctgtagatgaacccgaatgtgcaaat
gagagtggaggtgaacactgcacagatgacagcatgcagagcggcctggatattaacaag
ttaccgcaaggcacagtggtggtgaagccggagccggttgctaatgaagctaaagatgaa
tttagaggtccggagtttcgtaaccgaggaagtaaagtgaaagaggacgcaccacggaaa
cgttcggacgagaagctccaggagatatttaattgcacagcatgtggacaacaagtcaat
cattttcagagggactccatctttcaacatcctgcactgcatgttcttatctgcaagtca
tgtttcaagtattatatgagtgatgatatcagcaaggatgatgaagggatggatgaacaa
tgcaggtggtgtgcagagggtggcaatctgatttgctgtgactactgcagcaatgccttc
tgcaaaaaatgcattttgcgcaaccttggacgaaaagagctgtctgaaataatgaatgaa
gaaagcaaatggcactgctttgtgtgctgcccagagccgctgaaagactatgttaaaacc
tgtgaaaaagttttgctcagtttggaatctcgttataaaaagcccaggggagaaaatgac
aagacaaagcgtgaagaccgaaaacacaagcataccaagcgagaaaaaaccgcagtaaat
ggacaggattatgcttcagacggagcgggaaccgtaactttttcctgtaagaccttgaaa
gttcccaaagagctagtcaaaaagaccaaaaaactaatcgagaccacgaacggtttgaac
cgtacttttgtgcaattcctccagcacacatcaaatggccctgatgttaaggcggtaact
tatagacacttaaaggccttcaaatcagttttggctgatctgaaaaaggctcatacagct
cttgaggactcgcttgaaaaagaatttgaagagagaggcctcaagtttcagaatggagag
gagcaaagaccagcagacagtcaaactgcaggtaaaatggttgttaactcgaaccatgct
gaccccacaactgtcagtgatgatggtttggattgccctactaaggactataatcctgtg
gttgaagaggacaaccaacaggagagtaactcggctgatgttgagatgaaggacagcctt
ccactctcgccagaagaagctcaggattggtctgaagaaggagaccggcctgaagaaaga
ccccagtctgaagaaagaggccggtctggagaaagagaagggtctggagaaagagaaggg
tctgaagaaaaagtccggtctggaaaaagaggccggtctggaaaaataggcccgtctgca
gaaagagaagactctggagaaagagaagggtctggagaaagagaagggtctgaagataga
gaagggtctgaagatggagaagggtctgaagaaaaaggccgctctggaaaaagaggccgg
tctggagaaagagaagggtctggaaaaagaggccggtctggaaaaagaggcccatctgca
gaaagagaagggtctgaagaaagagaagggtctgaagaaaaaggccggtctggaaaaaga
ggccggtctggaaaaataggcccgtctgcagaaagagaagactctggagaaagagaaggg
tctgaagaaagagaagggtctgaagaaaaaggccggtctggaaaaagaggccggtctgga
aaaataggccggtctggagaaagagaaggctctgaagaaaaagtccggtctggaaaaaga
ggacggtctggaaaaataggcccgtctgcagaaagagaagactctggagaaagtgaaggg
tctgaagaaaaaggccggtctggaaaaagaggccggtctggaaaaagaggccagtctgaa
gaaagaagccaatcagaagaaagtgaagctaaagatcaggaaatggcagataatcctgac
tttgaggacagctctgtgccagcgggtgaagcgtctctggataaagacattgtgtctatt
ccaccgtctgtcccagaggaactctttgagatggtcgagagtctcgctgtaaagaaagaa
gaggatgctggcaactcgaccgactccagtgatgggaaatcgacaaccaaagctgaggtt
gtggaatccaataagagccttgcaaaactgggtaaaaaacttgtcgtcaaactaacacct
gttcctcttaaaattaccataaaacgagataagagcagtgaacggtcaccttcagaagaa
atggatggagagacgtcacaaaaggagggtcaagatagccgacgctcccccaggatgaag
accacacccttacgcaagtcgccggaggcaaagagcaaacgtaaagcaaggtcatcaaag
gcaaaagaagagcgcagtgacccagtcgaggagcagtgtgattcagactcggatgaggtc
cctgaggtcctgcagacggcggctttggaggccagctctgatgagagtgaaaccgaaaac
tgcgagaaagcttccggaaaacgtaccaagaaaaaattggttactcgctcaagtgcgaaa
gggaagccaaagcgcaaactcgatatgggctcctcggattcggaccagagtgacaagtcg
tcaacggcaaaaaaaagtagaaccaaaaagaagaaaggcagggaatcggactcctcaaac
cacaactccgatcttgagaggcagatgaaaaacctggccaggatgggtagtgggaaaaaa
aaatccaaaggcgtcaaaaaggaagaggaggaatccagcaaagagggcaaaaaaacacct
aaaaggtcattcgagcggaaacgaaggtctcagagagagaaggctaaaaccaaggaagag
tcttcctccagtgacgaagaagaggaggaggaggagaaggaggctgataactcaggagaa
gacagtgatcagcagaagattaaaccaatactcgagtctgttatggctagtattgatggt
ttccatcagtcgtcaggtgatgaagttgaattaaaggctgaatcctcccaggtggtggat
gatgatgatgaccctgaaaacagaattgccaagaggatgcttttggcgcagatcaaagcc
aactattcgtctggagctgatagttcatcggatgatgaaaacgcagacaaagaggatagg
aattcacgaaagagaggaaaagatggtgcaaaggagcaagacggaagcgaaaaagaggat
gaggatgaaacttcagactccggctcagatgtggatgtgaagaaaggtggccaaaggcac
cgtttgttgcgcaagaagttgaccctaagtgagggtgactctgatgaagagaccccagtc
aaaaaaaagaaagaaaccaaaaagagaggccggcggaaagtggacagtgatgattcggca
gactcggactttgagcattcgctctcgggctccagtgatgcgtcagggctcagtgaggct
gtgagtgaagaagaggatgaaaacaagtgcaataaacgcaaaacacgatcgtccaagaga
gcaggcaaagacggtgagagaagttaccagaaagaaaagaaaaaacgacgtcgcattaag
gttcaagactcctcatccagtgccaagagtggagaggaaggagatggagatggtgatggt
gacgaggaaggggatgacaaaggaacacccaaaaatcgcaagaagatccgcaagatcatt
aaagatgaccttctgcggacagagacccgggatgccctgaaggaggaagaggagaggagg
aaacgcatcgctgagagggagcgcctgagggagaaactacgagagactatcgtggtggag
gagtcgtcgcagatcgcgtgtcccatcaccacaaaactggtgctcgatgaggacgaggag
accaaggagcctctagtgcaggttcacaggaacctggtgaccaaactcaaaccccatcag
gtggatggtgtgcagttcatgtgggactgctgctgtgagtcggtgaagaaggtggagaag
tcctctggctccggctgtattctggcccactgcatgggtttgggcaaaaccctccaggtg
gtgacgtttctccacactcttcttctgtgtgagaagctgaacttctctacagctctggtg
gtgtgtcctctcaacactgtgctcaactggctcaatgagtttgagaagtggcaagaaggc
ctgaaggacgaggagagtttagaggtgaacgagctggccacagtgaagagacctcaggag
agagcgtacgctttacagcgctggcaggaagacggcggcgtcatgatcataggctatgag
atgtaccgcaacctcacgcaagggcgcaacatcaagagcaagaagctgaaagaaaccttt
cagaaaactctagtcgatccaggtccggattttgtcatctgtgatgagggtcacatcttg
aagaacgaagcgtctgccgtctctaaagccatgaactccatcaggactcgtcggcgggtg
gtgctgacgggaacgccactgcagaacaaccttattgagtatcactgtatggtgaccttc
attaaggagaacctgctgggatcagtgaaagagttcagaaatcgcttcatcaacccaatc
cagaatggccagtgcgccgactccactctcgttgatgtccgtgtcatgaagaaacgagcg
cacatcctctacgagatgctagcgggatgtgtccaaagaagagattacactgccctgaca
aaattcctccctccaaaacacgagtatgtgttagagatccggttaacacccattcagtgc
aagctttatcggtactatctggatcactttacaggtgtcggttctgctttggagggtgga
agaggtcgtgcgggaaccaaactcttccaggatttccagatgctcagcagaatctggacc
catccgtggtgcctccagctggactatatcagtaaagaaaacaagggatactttgacgag
gacagtatggaggagttcatagcctcagagacagaggagtcctccatgagtttgacttct
gaagacgagaagcccaaaaggaagaagaaacgaggcaaaggaaaagacaaaggctcagac
aagtctgacagtgatgacctggaagtgattaaggagtggaacaccagctctcgtggagga
aaccctgaggggaggaaccgagcagagcctgtggaggaggttcgggccccgtcaaactct
ggtcccggcagcccatcaccggactggtacaaagagtttgtgaccgaggcagattcagag
gtcctggagcattctgggaaaatggtggtgctttttgagatcctccgcatggctgaggac
gtggaagataaagtgttggtgttcagccagtctctcatttctctggacctcatcgaggat
tttctggagttggcagggagagccaaagaggaagggaaagtttcaccgtacaaaggtgag
ggcaagtggttcagaaaccttgactactaccgcctggatggttccacgaacgccttgacc
aggaagaaatgggcagaggagttcaatgacaccagtaatgttcggggtcgattgttcctc
atctcaaccagagctggttctctcgggatcaacttggtagctgcaaacagggtcatcatt
tttgatgcctcatggaacccatcctacgacgttcaaagtattttcagagtctatcgcttt
ggtcaagtgaagacagtgtttgtctacaggtttttggctcagggaaccatggaggataag
atctatgaccggcaggtcaccaaacagtcgctgtccttcagagttgttgaccaacagcag
attgaacgtcactttacgatgaacgaactgacggagctctacacttttgagcccgatcag
ctggacgatccctccgagaagaagagcaagcgggccacacccatgttgcccaaggatcct
ttccttgcagaactgcttcacagctacaaagatcagatcgtcggctaccacgagcatgac
tctttgctggaccacaaggaggaagaggcactgagtgaggaagatcgcaaggcagcgtgg
accgaatacgaggcagagaagaagggtctgtccatgcgtttcaaccagcaggcctatcct
caaatgggtgtgggagcatcaaactcctacttccccttcaacgtggccgccttggcctcc
atgagcaaccaacagttggaggatttgattaaccagggcaggcagaaagtgttggaggcc
acgagtgctctgaagtcagtgcctcgggaaccactggaggacatcatcgcgcaggtgtgg
aaggagaatccgagtttaccggaggcccaggtccagtccatggctcttgggaggcaggcc
ggctacgagctggaaatcaaacacagggaggctatttaccgtgatgtcctcagcaagcaa
caaactctgatgatgtacgtgcagaaggtggtggccaaccgtaaggtgcaggagcagcag
atggccctggcgagacaggggatgctcctcaaccagctggccatgcagaacggcctctcg
gcccccatgaaccagatggacctgctgggcttgtaccagcagctgggggcgctccagggc
ctgccctcctctcagctgggcaagaacccgggcccgtccaagggcctgtag
DBGET
integrated database retrieval system
