Pimephales promelas (fathead minnow): 120495104
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Entry
120495104 CDS
T08155
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120495104 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprm03019
]
120495104 (cnot10)
Messenger RNA biogenesis [BR:
pprm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120495104 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
ARM_TT21_N
TPR_8
TPR_7
ARM_TT21
TPR_10
TPR_MalT
TetR_C_5
Motif
Other DBs
NCBI-GeneID:
120495104
NCBI-ProteinID:
XP_039550449
LinkDB
All DBs
Position
Unknown
AA seq
749 aa
AA seq
DB search
MAETGSDQAGDMKHDNISSPGVSDQEKEMATNAFEAFNAGSYDESLKNLDNLQDLNKDDY
KITMNKAITEFYKSGQTTTSTLKQMLTTLKNQMHTAVEDIDGLDDVENSILYYNQAVIHY
HMRQYSEAISIGEKLYQFLEPFVEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLEKLTTK
EGNSKNGKGESANSMNKESAALKAEFTAMIEAAKSKMHQYKVRAYIQMKSLKACKREIKS
VMNTSGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPLKTGECVRCMFWNNLGC
IHFAMGKHNLGLFYFKKALQENDNTCAQLGDGGNGQAAKMFTGIPMCALLANKRYELLYN
CGIQLLHIGRPLAAFECLMEAVQVYHSSPRLWLRLAECCITANKGSTEQETKGLPSKKGI
VQAVVGQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQHDS
KPDNSSKSCSQPGSTESGSETSDACSGKTQEGDKFIPAAPSSPLRKQEVENLRCSILACS
AYVALALGDNLMALNHAEKLLHQTKLSGSLKFLGHLYAAEALISLDRISDAIAHLNPENV
TDVSLGVSSTEQDQGSDKGDLEPVESSGKQTPLCYPSSVSAARATMLFNLGSAYCLRSEY
EKARKCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPSVMPISSPD
LRKKPLPFQSSQPVQPIQTPSSFTQVQRK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaacaggctcagatcaagctggtgacatgaaacatgacaacatttcatccccc
ggggtctcagatcaagagaaagagatggcaaccaatgcttttgaggcttttaacgctgga
agctatgatgagtccctgaaaaaccttgacaaccttcaggatctgaacaaagatgactac
aaaattacaatgaataaagcaatcactgagttttataaaagtgggcagacaacaaccagc
accctgaagcagatgttaactaccttgaaaaatcagatgcatacagccgtggaagatatt
gatggtttggatgatgtcgaaaacagtatcctgtactacaatcaagcagtgatccattac
cacatgcgacagtattcagaagctatatccattggggagaaactctaccagtttctcgaa
ccgtttgtagaaaagtttgctcaggccgtttgtttcctgttggtggatctgtacctactc
accttccagccagagaaggctctgcacctgctggctgtgctggagaaactcactacgaag
gaagggaacagcaaaaatggcaaaggagagagtgccaacagcatgaataaggaatctgcc
gctctgaaagcagagttcacagctatgatcgaggcagctaaatcaaagatgcaccagtat
aaagtacgagcctatatccagatgaagtcactgaaggcctgcaaacgggaaatcaaatct
gtaatgaacacatctggaaattctgcgccctcactcttcttgaagagtaattttgagtat
ttgaggggaaattatcgtaaagccgtgaaactcctcaacagttcaaatattgcagagcat
ccaggacccttaaaaacaggtgaatgtgtgaggtgtatgttctggaataatcttggttgt
atccattttgccatggggaagcacaacctgggtctattttactttaaaaaggcacttcaa
gaaaatgacaacacatgtgcccagcttggtgatggcggtaacgggcaggcagctaagatg
ttcacgggcatccccatgtgtgctctgttagctaataagcgctatgagttgctgtataac
tgtgggattcagttacttcatatcgggcgaccgctggcagcgtttgagtgtctgatggag
gcggtgcaggtgtatcactccagccctcgactctggctcaggctcgcagagtgctgcatc
acagctaataaagggagcacggagcaggaaacaaaaggtttacccagtaaaaaggggatt
gttcaggctgttgttgggcagggctaccatcgcaagattgttctagcatcacagtccaca
caaaacaccatctacagtgaagggcagtcagctgcaatcccagtggccagtatggagttt
gcagcaatctgtctgcgtaacgctttgctcctgctgcctgagcaccagcagcacgacagc
aaacccgacaacagctccaagagttgcagtcagccgggcagcacagaaagcggcagcgaa
accagcgatgcctgcagtgggaagacccaagagggagacaagttcattcctgctgcgccc
tcatcacccttgagaaagcaggaggtggagaatctaaggtgctcaattctagcctgcagt
gcatatgtggctcttgctcttggggacaacttaatggctcttaaccatgcagaaaagctc
ttgcatcagactaagctgtcaggatcgctcaagttcctgggtcacctatatgctgctgaa
gccctgatctctctggacagaatctctgacgccattgcacatctcaatccagagaatgtc
accgacgtttcgttaggcgtgtcatccaccgaacaagaccaaggttctgataaaggtgat
ctggagcctgttgagtcctcagggaaacagacgcctttatgttaccccagctcagtaagt
gctgcccgggccacaatgctcttcaacctgggcagtgcgtattgcttgaggagcgagtac
gagaaagcccgcaagtgcctccatcaggctgcttcaatggttaacactaaggagattcct
ccggaagccatattattgggcgtctacttagaactgcagaacggaaacacacagctggcc
ctacagatcatcaaacggaaccagctcctcccctccgtcatgcccatctcctcccctgac
ctccgtaagaaaccacttcccttccagtcatcacagccagtacagcccatacagaccccc
tcctcctttacacaagtacagcgcaagtga
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