Pimephales promelas (fathead minnow): 120495172
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Entry
120495172 CDS
T08155
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
pprm
Pimephales promelas (fathead minnow)
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pprm03041
]
120495172 (rbm39a)
Spliceosome [BR:
pprm03041
]
Common components
Common spliceosomal components
General mRNP proteins
120495172 (rbm39a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
PRP38_assoc
RRM_occluded
RRM_5
RSRP
EPL1
RBD_DEAH11
Rtf2
RRM_7
CDC45
Motif
Other DBs
NCBI-GeneID:
120495172
NCBI-ProteinID:
XP_039550522
LinkDB
All DBs
Position
Unknown
AA seq
523 aa
AA seq
DB search
MADDLDIEAMLEAPYKKDDIKSISTNGHEERSKKKKKSKSRSRSRERKRSKSRERKKSHD
HRRSRSRERKRSRSRERRRSRSRSRERGGRYRAPFSGLKFNGGPRGKTGPPPAIKLSRRR
SRSRSPFKKDKSPIRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRI
ISDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQAEKNRAAALANNLQK
GSSGPMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECA
KKALEQLNGFELAGRPMKVGHVTERTDASTASSFLDNDELERTGIDLGTTGRLQLMARLA
EGTGLQIPPAAQQALQMSNSMVAMAAATAAMNPGLSFNINVPTNQAMNLPSQPIATHCFQ
LSNMFNPNSENDHGWEIEIQDDVIEECNKHGGVIHIYVDKKSAEGNVYVKCPTIPAAMAA
VSALHGRWFGGKMITAAYVPLPTYHNLFPESVQATQLLMPSRR
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgatttggacatcgaagcaatgctcgaggctccatataaaaaggatgacatc
aagtccataagtaccaatggccacgaggagcggagcaagaaaaaaaagaagagcaagagt
cgcagcaggagccgggagaggaagagaagcaagagtcgcgaacgcaagaagagtcacgac
cacaggaggagccgcagcagagagcggaagcgcagccgcagcagggagagacgccgcagc
cgatccaggagcagggagcgtggcgggcgctacagagctccattttctggcctgaaattt
aacggtggccccagagggaaaactggcccacctcctgccatcaaactaagtcgtagaagg
tctaggagccgcagtccattcaagaaagacaaaagccctataagacagcctattgataat
ctcacccctgaggaaagggatgcgcgcacagtgttctgtatgcagctggcagctagaatt
cggccacgagacctggaggaattcttttctgcagtgggaaaagtgcgagatgtgcgaatc
atctctgacagaaactccagaagatccaaaggaattgcttacattgagtttgtagattct
acctctgtacctttggcaatcggtctgtctggtcaaagacttcttggagtaccaatcatt
gtccaggcttcacaggctgagaagaacagagcggctgcattggccaacaacttacagaag
ggcagttctggacctatgagactgtatgtcgggtcattacacttcaacatcacagaagac
atgctccgaggcatctttgaaccatttggacggattgacagcattcaactgatgatggac
agtgaaacgggacgatctaaaggatatggctttattacattttctgatgccgaatgtgcc
aagaaggctctggaacagcttaatggctttgagttggctggcagaccaatgaaagttgga
catgtgacggagcgcactgatgcctccaccgccagctccttcctggacaacgatgagctg
gaaaggaccggtattgatcttggaactaccggaagacttcaactcatggccagactggcc
gaaggtacaggtctgcagatcccacccgctgcacaacaggcccttcagatgagtaactcc
atggtagccatggctgctgctactgctgctatgaaccctggattgagttttaacatcaat
gtgcccacaaaccaagctatgaatctaccatcacagccaattgcaacacactgtttccag
ctgtctaacatgttcaatccaaactcagaaaatgatcatggttgggaaatcgaaattcag
gatgatgtcattgaagagtgcaataaacatggtggagtcatacatatatatgtggacaag
aaatccgctgaaggtaatgtctatgtgaaatgtcccaccattcctgctgccatggcagca
gtcagtgcgttacatggacgctggtttggaggtaaaatgatcacagcagcttatgtccct
cttcctacataccacaaccttttcccagagtcagtgcaggctacacagcttcttatgccc
agtcgccggtga
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