Pimephales promelas (fathead minnow): 120495267
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Entry
120495267 CDS
T08155
Symbol
nfasca
Name
(RefSeq) neurofascin homolog (chicken) a isoform X1
KO
K06757
neurofascin
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04514
Cell adhesion molecule (CAM) interaction
pprm04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
120495267 (nfasca)
04517 IgSF CAM signaling
120495267 (nfasca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pprm04515
]
120495267 (nfasca)
Cell adhesion molecules [BR:
pprm04515
]
Immunoglobulin superfamily
L1 family
120495267 (nfasca)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
ig
fn3
Bravo_FIGEY
V-set
Ig_VEGFR-1-like_5th
C2-set_2
Ig_6
Ig_PDGFR_d4
Izumo-Ig
Fn3_PBP1
FN3_DSCAM-DSCAML_C
BiPBP_C
Fn3_ROS1
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
120495267
NCBI-ProteinID:
XP_039550674
LinkDB
All DBs
Position
Unknown
AA seq
1384 aa
AA seq
DB search
MWTQGRWAALAVLSIILLLSKEAAPIEVPLDPKIQQELKQPPTIVKQSLKDYIVDPRDNI
IIECEAKGNPVPTFQWRRNGKFFNVGKDPRVTMRTRSGTLEFRSSGKPEDYEGEYQCFAS
NDFGTAISNKILLRVSKSPLWPKEVLEPVTVREGASLVLPCNPPPGLPPPETFWMDSSIM
PIPQDKRVSMGLNGDLFFSNVLAKDAISDYSCNARFEFTHTIQQKNPYTLKVQTKEPYND
TFLNSTDLYGVRNVPETQPTFLSPKGIASSKIVLRGEQLLLECIAAGVPTPSINWFKRGG
DLPAKKVKLENFNKTLRILNVSEEDSGGYICMGSNKIGSIRHAVEVHVKAAPYWLDKPTN
LVLAPDENGRLVCRANGNPKPTIQWLVNGEPIESSLPNLNQEVLGDTIMFHSVQIGTSAV
YQCNASNEHGYLLANAFVSILDMAPRMLGPKNQLIKVIENNRTFLDCPFFGSPFPLLRWF
KNGLGSGLDGGQYRLYPNGTLEINQARPEDQGTYTCVASNILGKMENQVRLEVKEPTRIV
RAPEHVTEPRGSTVRFDCRVKRDPSLLVTVTWLKDDKPLSFSWTFGGRLRKDDESLTIQN
VNPEDGGTYTCTAKTEIDEDSASARLTVIEDDISSASNRSASAGRPDPPQDLELSDPSAR
SVRLTWVPGNENNSPVTHFFVQFEEDRWEPGKWQNLSVYDGNLNSVNLQLSPFVNYQFRV
IAINAVGQSQPSHPSARYQTSGASPDVIPGGLKGWGSKKNNMEITWQALKNTERNGPNLQ
YLVSWRRKDTEEEWVNIITSRAEHTIHNTDTYVPYEIKIQAVNDFGYGPESNIVIGYTGE
DRPSAAPTELKVSKINSTKVNVHWVPVDPSTVNGEFKEYKLYYWREASLIKGLKVNKTKL
HKGFFTTAEHPSGILTELFPYSKYKIYMVVANREYEGPQSNTVEFQTKEGEPGAPKYFRI
QRHTDVVHLKWDKPLEPNGILIGYTLQYHTVNGTQRGERKVESFPANVTDYVVNLPHRLT
RFKFYLAARTQVGAGEVYAVESPHFANEGTPDTDSTVVAVNFTDALIFETPPPPPPLSTD
PIPAILTPEPATPAPTTAAPPKPITTSTTTTTTTTTTTTTTTTTTTTTTTTASTTLLPVR
PMSPKTVDWKMLAPNVKIWNLTVDANNDYANVSWKHNFSVDSSKFVLEYTLDSNGSMKSI
QVNQQPFIKLAGLVAGAKYRLRVYSHEHHSISSDFVTFETGRAYMEQEDIATQGWFIGLM
CAVALLVLILLIVCFIKRSRGGKYPVREKKDLPLDPVDHKDQDGSFDYHSDEDNKPLQGS
QTSLDGNVKESDDSLVDYGEGGDGQFNEDGSFIGQYTVKKDKEETEGNESSEATSPVNAI
YSLA
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgtggacacaggggcggtgggcggcgttggcggtgttgtcaataatcttgctgctgtca
aaggaagcggctccaattgaagtcccactggacccaaagatccagcaagagctgaaacag
ccccccaccattgtgaagcagtcactaaaggactacattgtggaccccagagataacatc
atcattgaatgcgaggccaaggggaaccccgtgccaacgtttcagtggcggcggaatggg
aagttcttcaacgtggggaaggatccgcgggtgaccatgcggactcgttctggaactctg
gagttcaggagcagtgggaaaccggaagattacgaaggagagtaccagtgctttgcctcc
aacgactttggcacagcgatttccaacaaaatcttgcttcgagtgtcaaagtctccgctg
tggccgaaagaggttctggagccggtaactgtgcgtgagggggcatcactcgtcctgccc
tgcaaccctccccctggtcttccccctcctgaaaccttctggatggacagctccattatg
cctataccacaggacaagagggtgtcaatgggtctgaatggtgacttgttcttctccaat
gttctggctaaagacgccatctctgactacagctgcaacgctcgcttcgagttcacacac
accattcagcagaagaacccctacacccttaaagtgcaaacaaaagaaccttataatgac
acctttctcaactccactgatctgtatggtgtacgaaatgtaccagaaacccagcctacc
tttctgtctccaaagggcattgccagctccaagatcgtgctccgaggggaacagcttctt
ctggagtgtatagcagctggagtcccaactccttccattaattggttcaaaagaggagga
gacttgccagcaaaaaaagtcaagcttgagaacttcaataaaactttacgcatcctcaat
gtgtccgaagaagactctggcggctacatctgcatgggcagcaacaagatcggcagcatt
cgccatgctgttgaagtccatgtcaaagctgcaccctattggctagataagcccaccaat
ctggtgcttgctcctgatgagaatggacggttagtgtgtcgtgccaatgggaaccctaaa
cccaccatccaatggctggtgaatggggaaccgattgaaagttcactaccaaacctaaac
caggaagttcttggggataccatcatgttccattcggtccagatcggaaccagcgcagtg
taccaatgtaacgcctccaatgagcacggttatctactggccaatgcttttgtcagcatc
ctggacatggcaccacgaatgctaggcccaaagaatcagctgatcaaagtcatcgaaaac
aacagaaccttcctcgactgccctttctttggctcaccgttccctttactgcgctggttt
aagaatggcctaggcagtggtctggatggtggtcagtacaggctttacccaaacggtact
ttggagatcaatcaagcccggccagaagaccaaggcacctacacctgtgtcgccagcaac
atcctgggcaagatggagaatcaggtgcgcctggaggttaaagagcccacaaggatagtg
cgggcacccgagcatgtcacagaacctagagggagcacggttcgctttgactgtcgagtt
aaacgcgatccttctcttcttgttacggtcacatggctgaaagatgacaagcctctaagc
ttcagctggacttttggtggccggttgagaaaggatgatgagtccttgactatccagaat
gtcaatccagaagatggaggaacctacacgtgcactgccaaaactgagatagatgaggac
tctgcctcagctcgccttacagttatagaggatgacatctcttctgcctcaaatcgtagt
gcctctgcaggtcgacctgacccccctcaggatcttgagctctcggacccttcagcacgt
agtgtcagactcacctgggtgcctgggaatgaaaacaacagtcctgttacacatttcttc
gtccagtttgaagaggacaggtgggagccgggcaagtggcagaacctgtctgtatatgat
ggcaacctaaactcagtcaacctacagctgtcaccctttgtcaactaccagttcagagtg
attgcaatcaatgctgtgggccagagtcaacccagccacccttccgcacgctatcagacc
agcggagcctctcctgatgttatccctggtggtcttaaaggctggggaagcaagaagaat
aacatggagatcacatggcaggcccttaagaacacagaaaggaatgggccaaacctgcaa
tatttggtctcctggagaaggaaagacacagaggaagagtgggttaacataattacatcc
agagcagagcacactatccataatacagacacctatgtcccatacgagatcaaaatacag
gccgttaatgactttggatacggcccagagtcaaacatagtcatcggttacactggggaa
gacagaccgtccgctgcgccaacagaactcaaggtgtcgaagatcaacagtaccaaagtt
aatgttcactgggtgcctgtggaccccagcactgtgaacggagagtttaaagagtacaag
ttgtactactggcgggaggccagccttatcaaaggcctgaaagtaaataagacaaaattg
cataaaggtttcttcaccactgccgaacatccttctggcatcctgacagagctatttcca
tacagcaaatataaaatatacatggtggtggctaatagagagtatgagggaccacaaagt
aacactgtggagtttcaaaccaaggagggagagccaggagctccaaagtactttaggatt
cagaggcacacagacgtggttcacctgaagtgggacaagccactggagccgaacggtatc
ctgattggatacacactccaataccacacagtgaacgggacgcagcggggagagaggaag
gtcgagagttttccagccaatgttacggattacgttgtgaatctgcctcaccgcctaaca
cggttcaagttctacctagcagctcgcacgcaggtcggcgcaggagaggtgtacgccgtg
gagtcgccacatttcgcaaatgaaggcaccccagatactgactctacagttgtagccgtt
aactttacagatgccttgatcttcgaaactcctcctcctccccctcccctctccactgac
ccaatcccagcaatacttaccccagaaccagccacaccagcccctacaactgctgctccg
cccaaacctattaccacttccaccactactaccactacaacaactactactacaaccaca
actactacaactactaccaccaccactacaacagcttccaccacacttcttcctgtccgg
cccatgtctcctaaaacagtggattggaaaatgctggccccgaatgtaaagatctggaat
ctgaccgtggatgctaacaatgactatgctaacgtcagctggaagcacaacttctccgtt
gacagcagcaagtttgtgctagagtacacactggacagtaatgggtcgatgaaaagcata
caagtaaaccagcagcctttcattaagctggctgggctggtggccggggccaagtatcgg
ttgcgggtctattcccatgagcaccactccatcagcagcgactttgtcacgttcgagaca
ggcagagcctacatggagcaggaagacatcgctactcagggctggttcattgggctgatg
tgtgccgtcgctttattggttctcattctgctcattgtttgtttcatcaagaggagtcgt
ggaggaaaatacccagtgagagagaagaaagacctccccttggatcctgttgaccataaa
gaccaagatggatcatttgactatcacagcgacgaagacaacaagccattgcagggcagc
caaacatccctggacgggaacgtaaaagagagcgatgacagtctcgtggactatggtgaa
ggaggggacggccagttcaacgaggacggctccttcattggccagtacacagttaagaag
gacaaagaggagactgaaggaaacgagagctcagaagccacgtcacccgtcaatgccatc
tactctctggcatag
DBGET
integrated database retrieval system
