Pimephales promelas (fathead minnow): 120495565
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Entry
120495565 CDS
T08155
Name
(RefSeq) cyclic nucleotide-gated cation channel beta-1-like
KO
K04952
cyclic nucleotide gated channel beta 1
Organism
pprm
Pimephales promelas (fathead minnow)
Pathway
pprm04744
Phototransduction
Brite
KEGG Orthology (KO) [BR:
pprm00001
]
09150 Organismal Systems
09157 Sensory system
04744 Phototransduction
120495565
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pprm04040
]
120495565
Ion channels [BR:
pprm04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
120495565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
cNMP_binding
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
120495565
NCBI-ProteinID:
XP_039551130
LinkDB
All DBs
Position
Unknown
AA seq
1552 aa
AA seq
DB search
MFNWVVKVVPHPPDTQDDLKDEPITTNGKTSNQDKFNSYKTGREEDQSSQTSQGSVQNGM
LNWLSNGFASALPQPAGSPHLTRANSDAKSLQEEGAADRARVIGWISQGIGKVVPQPDEK
YIEKETPESEEVTEVYVAKDLPDEEPLPHIPVVELVSEDEVSEVEIPAQFPPNVMSWIKS
GFQNAIPHHVTRPPNSNSSTPRSSQCSNKVYSPPPESVTSMTEIDPKTPSMVGWIVQGLG
LSMPQLVLRNKECLEDERIVQNGSARSVPADLILEEIDSEDEAQAKETCPAANSPPYSHH
QSHPQTPWSPEQSLPLSQANIELEDAETQTARWTPMIESIRREAEDTAILIMEERLIQER
LAMARMAEEVARHTAEMAVRELTQARHGIQTIAEEPEDVDQDVDQELQVLQEEDSDIEVP
RSQIAECQVPLVKEFVPEGREAEAVNTAFAVETPVEEFKSSSPLQEEPEPEPEPVAPEPV
PKPEELHEEEEPRDSSVAEEEPDPITQQPQSISSTSVSQTNSPVESTFTEEESSVPSRCD
ALKSCSMRVPYASQALNEFNQFLIDIDVTLPKVPSMPNLPPALSQITQQLPPLPPQLAQL
PQQISQLPQQLSQRFSKIAPQFPNQTVFSAPQFPSFPVQLSSLPQQLSNIPQQISNLPQK
LSNFPQRFTSIPRFSILPQQISNIPQQLSSIPQKISSIPQKISNIPQCAQQCYTNIQSRL
NKLKPEQDAQGAAAEDSILDLPNVPSYPRLPPITPSRQLSGVSNPAFHIEDDPTSARPSV
SSRLSVHPAVNVEDVDSDRGRSRPIPPIINPQDPNLKTLTVPGVRKANRTRDRKPQTIWT
KIKRLYSQDDEEEEELETSVRAWPSQSSISSGDDGLNQRPSSSASQTSTVVNERLQELVK
LFKERTERVKEKLIDPDNSDDETPPGSPAKQAPAPPPEPPAEQKTEQEVPEAPAKKEDEK
TKLLCCKIKPQSRIARLLQYRFPTSIDPFTNLMYVLWLFCVSLAFNWSAWMIPVRWAFPY
QTPDNIHVWLLIDYLCDAVYILDVLAFQPRLQFVQDGDIVSEKKEMRNNYIKALRFKLDV
VSLLPLELLYFKTGFNPLLRLPRILKFMSFFEFNKRLEAILTNAYVYRVIRTTTYLLYAV
HCNACLYYWGSSYEGLGFSDWAYDGTGNSYIRCYYFAVKTLLTIGGLPGPTTLFEIVFQL
INYFIGVFVFSIMIGQMRDVVGAATAAQTNYRACVDNTVKYMASYRIPKDVQNRVKTWYS
YTWQSQGMLDEQELLDQLPDKMRLDIAVDVSFNIISKVPLFQGCDRQMIFDMLKRLRSVV
YLPGDYVCKKDEVGREMYIIKAGEVQVVGGPDGKTVFVTLKAGAVFGEVSLLAVGGVNRR
TANVVARGFANLLILTKKDLNDIIVHYPESQKLLRKKAKKMLMKDKKPAEKKEEEKEPIP
IIPPRAETPKLLKAALEMTVKSGMKGTWSKLKDRTNRSSVSLQRSVSSSATPNSPVHEPH
SEQDADTLSQMSDSSIQIPATPTGTGEGNVFAEENPAEEETKLHRGNPAANK
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atgtttaactgggtggtgaaggtcgtgccacatcctcctgatacacaggacgatctgaag
gacgagccaattacaacgaatgggaaaacatcaaatcaagataagttcaattcatacaaa
acaggcagggaggaagaccaatcatcccaaacctcacaggggagtgttcagaatggcatg
ttgaactggctttccaatggttttgcgagtgcgctgccacaacctgcagggagtcctcat
cttacgagagccaactctgatgctaaatcactgcaggaggaaggcgctgctgacagggct
agagttattggctggatctcgcagggaattggaaaggtggtcccacagcctgatgagaaa
tacatagagaaagagactccagaatctgaagaagtcacagaggtttatgtagccaaggac
ctcccagatgaagagcctttgccacacataccagtagtagagctagtgtcagaagacgag
gtgtctgaggtggaaatccctgctcagttccctcccaatgtaatgagctggataaagagc
ggctttcagaatgctataccgcaccatgtgaccagacccccaaattccaattcttcaaca
ccgaggtcatcacaatgctcaaacaaagtatattcacctcctccagagtcagtaaccagc
atgacggagattgatccaaaaactcccagtatggtgggctggattgttcagggcctggga
ctttcaatgccacagctggtgcttagaaacaaagaatgtttggaggacgagaggattgtg
caaaatggcagtgctcgatcagttcctgcagatctcattcttgaggagattgactctgaa
gatgaggctcaagcaaaggaaacatgtccagcagcgaactcacctccatattcacatcat
cagtcccatccacagacgccttggtcaccggaacaatctcttccactctcacaagcaaac
atagagctggaggacgcagagacccaaactgcccgatggacgcccatgatcgagagcatc
aggagggaggcggaggacaccgccatattgatcatggaggaacggttgatacaggagcgt
ctagcaatggcccgcatggcagaagaagtggcacggcacacagcagagatggctgtcagg
gagttaacacaggcccggcacggcattcagaccattgcggaagagcctgaagatgttgat
caagatgttgatcaagaactacaagtgttgcaggaagaggacagtgatatagaagtccca
cggagtcaaattgcagagtgtcaagtacctttagttaaggagtttgttccagaaggacgg
gaggcagaagctgtaaacactgcgtttgcagttgaaacccctgtggaggagtttaagtcc
tcttcacctcttcaggaggaaccagagcctgaacctgaacctgtagcacctgaacctgta
cctaaacctgaagagcttcatgaagaggaggagcccagagactccagtgtagctgaagaa
gaacctgacccgattactcagcagcctcagtccatttccagcacctccgtttcacaaact
aattcaccggtggagagtacatttactgaagaggaaagtagtgtcccttccagatgtgat
gcgctgaagagctgttccatgcgtgtaccatatgcatcacaagccctcaacgaattcaac
cagttcctgatagacattgacgtcaccctgcccaaagtgccttccatgcccaatctgccc
cctgctttgtctcagatcacccaacagctgccgccgctccctcctcaactggcacagctt
ccgcaacaaatctctcagctaccccaacaactttcccagcgattctccaaaatcgcccca
caattccccaaccagacggtttttagtgctcctcagtttcccagcttccctgtgcagtta
tccagtctcccacaacagctgtccaacattccgcaacaaatatcaaacctcccgcaaaag
ttgtccaactttccacaaaggttcaccagcattccacggttttccatccttccgcaacag
atctccaacattccacaacaactctccagcattccacaaaaaatatccagcattccacaa
aagataagcaacattccacagtgtgcccagcagtgttacactaacattcagagccgtctc
aacaaacttaagccggaacaggatgcccaaggagcagccgctgaagactccatcctagac
ctgcccaatgtgccctcttacccccgtctgccacccatcaccccttccaggcagttgtca
ggcgtctccaaccctgccttccacattgaggatgaccccacctctgctagaccctcagtg
agctccagactgagtgtgcacccagccgtgaatgtggaagatgttgattctgaccgaggg
agatctcgccctataccccctataataaacccacaggatcccaacctcaaaacccttact
gtgcctggtgtccgtaaagccaatcgaaccagagacagaaaaccacagacaatttggacc
aagatcaagagactttactcacaagatgatgaggaagaggaggagttagaaacctcagtc
cgggcctggccaagccagagtagcatctcaagtggagatgacgggcttaatcaacggcca
tcctcttctgccagccagacaagcaccgtagtaaacgagagattacaggagctggtcaag
ctgttcaaagagagaacagagcgggtcaaagagaaactgatcgatccagacaattcagac
gatgagacaccgcctggctccccagctaagcaagctccagctcctcctccggaacctcca
gcagagcagaaaaccgagcaggaggtgcccgaggcccccgccaagaaagaagatgagaaa
acgaagctcctgtgctgcaaaataaaacctcagtccaggattgctcggcttctgcagtat
cgttttccaacaagcatcgaccccttcactaatctgatgtacgtactttggctgttttgc
gtgtctttggcgtttaactggagcgcctggatgattcctgtgcgttgggcgtttccttat
caaacaccggataacatccatgtgtggctgttgattgactacttatgtgatgccgtctat
attctggacgtcctggcctttcaaccccgacttcagtttgtgcaagatggggatattgtg
agcgagaagaaagaaatgagaaataattacatcaaagctttacgattcaagctggatgtt
gtcagtctacttcctctagagcttctctacttcaaaacagggtttaatccacttctccgc
ttacccaggatcctgaagtttatgtctttctttgagttcaacaagcgtcttgaagctatc
ctgaccaacgcttatgtttacagagtcattcgaaccaccacctacctgctttatgcggtc
cactgcaatgcctgtttgtactactggggctcttcatatgaaggtctgggtttctcagat
tgggcctatgatgggacgggaaatagttacattcgctgctactactttgctgtgaagact
ctgctgactattggtggcctgccaggacccacaacactttttgagattgtgtttcagctc
atcaattactttattggagtgtttgtgttctccatcatgattggtcagatgagagatgtt
gtgggtgcagctacggcggctcagacaaactatcgtgcctgtgtggacaacacagttaaa
tacatggcctcctaccgcatacctaaagacgtgcagaacagagtgaaaacctggtacagc
tacacgtggcagtcccaaggcatgctggatgaacaagagcttctagatcaacttcctgat
aagatgaggctggatatagcagtggatgtcagcttcaacattatcagcaaagtgccactc
tttcagggctgcgatagacagatgatctttgacatgttgaagaggctcagatcagtggtg
tatcttccaggagactatgtctgcaagaaggatgaagtgggccgtgagatgtacatcata
aaggcaggggaagtccaggtagttggtggtcccgatggaaagactgtgtttgtgacccta
aaagcaggagcggtgtttggagaggtcagcttgcttgctgtaggcggagtaaaccgacga
acagctaacgttgtagcgcgtggctttgcaaacctactcatcctgaccaaaaaggacctg
aatgatatcattgtgcactatccggaatcccagaaactgctccgcaagaaagcaaagaag
atgttgatgaaggataaaaagccagctgagaagaaagaggaagagaaggagcccatcccg
attattcctcctcgtgcagagacgcccaaactgttaaaagcagcgctggagatgacggtg
aaatcaggaatgaaaggaacatggtccaaactgaaggacagaaccaacagatcaagtgtc
tccttgcagcgctccgtctcttcttctgcgacgcccaactcaccagtccatgaaccgcac
tcggagcaagacgcagacacactgtctcagatgtcagacagctcaattcaaatccctgcg
acccccaccggcactggggaagggaatgtatttgctgaagagaacccagctgaggaggaa
acaaaattgcacagaggtaatccagcggcaaataaataa
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integrated database retrieval system
