Pseudomonas protegens Cab57: PPC_0042
Help
Entry
PPC_0042 CDS
T03613
Symbol
trpI
Name
(GenBank) HTH-type transcriptional regulator TrpI
KO
K27042
LysR family transcriptional regulator, trpBA operon transcriptional activator
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ppro03000
]
PPC_0042 (trpI)
Transcription factors [BR:
ppro03000
]
Prokaryotic type
Helix-turn-helix
LysR family
PPC_0042 (trpI)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_20
HTH_5
MarR_2
HTH_30
HTH_IclR
HTH_24
I-HmuI_NUMOD-like
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BAO59389
LinkDB
All DBs
Position
42000..42893
Genome browser
AA seq
297 aa
AA seq
DB search
MSRDLPPLNALRAFEATARLNSVSQAAEQLHVTHGAVSRQLKVLEEHLGLSLFVKEGRGL
KLTDSGIRLRDASSEAFERLRDVCAELTQGSADAPFVLGCSGSLLARWLIPRLGRLNADL
PDLRLHLSAGEGDLDPRRPGLDALLVFAEPPWPADMQVYELASERIGPVLSPRYAGYPRL
RQAPAGVLASEALLHTTSRPQAWPSWARRNGLNPETLKYGQGFEHLYYLLEAAVAGLGVA
IAPQPLVAEDLLAGRLVAPWGFSDTPGQLALWLPKRAADGRARQLAQWLENELRQQL
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcgacctccctcccctgaatgccctgcgggccttcgaagccactgcccggctc
aatagcgtcagccaggcggccgaacagctgcacgtcacccacggcgcggtcagccggcag
ttgaaggtgcttgaagaacacctggggctgagccttttcgtcaaggaaggccgtggcctt
aaactcacagattccggcattcgcctgcgcgatgccagcagcgaggccttcgaacgcctg
cgggatgtctgcgccgagctgacccagggcagcgccgatgcgccctttgtcctgggttgt
tccggaagcctgctggcgcgctggctgatcccgcgcctggggcgcctgaacgccgacctg
ccggacctgcgcctgcacctttcggccggtgaaggcgacctcgacccccggcgcccgggc
ctggatgccttgctggtctttgccgagccgccctggccggcggacatgcaggtctatgaa
ctggccagcgaacgcatcggcccggtgctcagcccgcgctatgccggttatccacgcctg
cggcaggcgccggctggcgtcctggccagcgaggccctgctgcacaccacttcccgcccc
caggcctggcccagttgggcacggcgcaacggcctgaatcccgaaacgttgaagtacggg
cagggtttcgagcatctgtattatttgctggaggcggccgtggcgggcctgggggtggca
attgccccgcagccgctggtggccgaggacttgctggcaggcaggctggttgcgccctgg
ggtttttccgacaccccggggcaactggcgctgtggttacccaagcgcgccgcggatggg
cgcgcccggcaattggcgcagtggctggaaaacgaactgcgccagcagctttag
DBGET
integrated database retrieval system
