Pseudomonas protegens Cab57: PPC_0086
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Entry
PPC_0086 CDS
T03613
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03030
DNA replication
ppro03410
Base excision repair
ppro03420
Nucleotide excision repair
ppro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPC_0086
03410 Base excision repair
PPC_0086
03420 Nucleotide excision repair
PPC_0086
03440 Homologous recombination
PPC_0086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppro03032
]
PPC_0086
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_0086
Enzymes [BR:
ppro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPC_0086
DNA replication proteins [BR:
ppro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PPC_0086
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PPC_0086
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPC_0086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
BAO59433
LinkDB
All DBs
Position
81107..83896
Genome browser
AA seq
929 aa
AA seq
DB search
MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFD
AKGGTFRDDMYAEYKANRPSMPDDMRVQIEPLHASVIALGFPLLCVEGVEADDVIGTLAR
SSAAADRPVVISTGDKDMAQLVDGHITLVNTMSGSSMDVEGVKEKFGVAPEQIIDYLALM
GDSSDNIPGVPGIGPKTASGLLVGVNGGLKELYEQLDIVPTLPIRGAKTLPAKLEEHKEM
AFLSYQLATIKVDVPLDVGLDDLHLGEPDREKLVELYSLLEFKSWLDELQRDAKRVELSG
AEAAPAAVPPQAVEQAPLELQYETILDQERFDAWLEKLKGAKLIAFDTETTGIDAQQAQL
VGLSFSVKAGEAAYVPLTHSYMGAPAQLDRDSVLLALKPLLEDPKLLKVGQHAKFDMNIL
ANCAIGGDQANGITVRGVAFDTMLESYVLNSTATRHDMDSLAQKYLDHSTVSFQDIAGKG
AKQLTFDQIPLEQAGPYAAEDADVTLRLHQVLFDKLTAIPSLASVLTDIEMPLVPVLARI
ERQGALVDDKLLGVQSIELGDKMVALEREAFEIAGEEFNLGSPKQLGSILYDKLGLPVLK
KTAKGQPSTAEEVLAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY
HQAVASTGRLSSSDPNLQNIPVRTAEGRRIRQAFIAPPGYKLLAADYSQIELRIMAHLSR
DEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGV
DTKQAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPEINSNKPQERAGA
ERTAINAPMQGTAADIIKKAMVAVDNWLESSGLDARVILQVHDELVLEVREDLVDQVREE
IRGHMSGAATLDVPLLVEVGVGNNWDEAH
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagcccccctcgtcctggtggacggttcttcatatctgtaccgcgcgttccac
gcgctgccaccgctgaccacctccaaaggcctgcctaccggcgcggtcaagggcgtgttg
aacatgctcaagagcctgcgcaagcagtacccggatagcccgttcgccgtggtcttcgat
gccaagggcgggaccttccgcgatgacatgtatgccgaatacaaggccaaccgtccgagc
atgcccgacgacatgcgggtgcagatcgagccgttgcacgccagcgtgatcgccctgggt
ttccccctgttgtgcgtggaaggggtcgaggccgatgacgtgatcggcaccctggcccgc
agcagcgcggcagcggaccgcccggtggtgatttccactggcgacaaggacatggcacag
ctggtggacgggcacattaccctggtcaacaccatgtccggtagcagcatggacgtggaa
ggcgtgaaggagaaattcggcgtcgctcccgagcagatcatcgattacctggcgctgatg
ggcgactcttccgacaacattcccggggtgccgggcattggtccgaagaccgcttccggc
ctgctggtcggggtcaatggcgggttgaaggagctgtacgaacagctcgatatcgtaccg
accctgccgatccgcggggccaagaccttgccggccaagcttgaagaacacaaggaaatg
gccttcctctcctatcagttggcgaccatcaaggtcgacgtgccgctggatgtcgggctc
gacgacctgcacctgggcgagccggaccgcgagaagctggtggagctctacagcctgctg
gagttcaagagctggctcgacgagttgcagcgcgatgccaagcgtgtcgagctcagcggc
gctgaggcggcacccgccgccgtgccgccgcaggctgtggagcaagctccgctggagctg
cagtacgaaaccatcctcgaccaggagcgtttcgatgcctggctggagaagctcaagggc
gccaagctgattgccttcgataccgaaaccaccgggatcgatgcgcagcaggcgcaactg
gtgggcctgtccttctcggtcaaggccggcgaagcggcctatgttcccctgacccactcc
tacatgggcgcgccggcacagctggatcgcgacagcgtactgctggccctcaagcccttg
ctggaagatcccaagctgctcaaggtcggccagcacgccaagttcgacatgaacatcctg
gccaactgtgccatcggcggcgaccaggccaatggcatcaccgtgcgcggcgtggccttc
gacaccatgctcgaatcctacgtgctcaactccaccgccacccgccatgacatggacagc
ctggcgcagaagtacctggaccacagcactgtgagtttccaggacatcgccggcaagggt
gccaagcagttgaccttcgaccagattccccttgagcaggccggcccctacgccgcggaa
gatgccgacgtgaccctgcgcctgcaccaggtcctgttcgacaagctgaccgcgataccg
agcctggccagcgtgctcaccgatatcgaaatgcctttggtgccggtcctggcgcgcatc
gagcgccagggagcactggtggacgacaagctcctgggagtgcagagcatcgaactgggg
gacaagatggtcgccctggagcgcgaagccttcgagatcgccggcgaggagttcaacctg
ggctcgcccaagcagctgggcagcatcctctacgacaagctcggcctgccggtgctgaaa
aagactgccaagggccagccatccacggctgaagaggtgctggccaagctggcggaagac
gactatccgctgccgcgggtgctgatgcagtaccgttccatgagcaagctgaaaagcacc
tataccgaccgcctgccggagcagatcaacccgcgtaccgggcgcatccacacctcctat
catcaggcggtagcgtccaccggccggctgtcctccagcgatccgaacctgcagaacatt
ccggtacgtaccgctgaaggccggcgcattcgccaggccttcatcgcgccgccaggctac
aagctgctggcagcggactattcgcagatcgagttgcggatcatggcgcacctgtcccgc
gacgaaggtttgctcaacgcctttcgcaacaacctggacgtgcacaccgccacggcggcc
gaggtgttcaaggtcgagctcaaggacgtcacttccgatcagcgccgcagcgccaaggcc
atcaacttcggcctgatctacggtatgggcgcgcagaagctgggcaaggacatcggtgtc
gataccaagcaagccaaggcctatatcgacacctacttcgcgcgttatccgggggttcgc
gagtacatggaccgcacccgcgcccaggccgcggaccagggttatgtcgagaccatcttc
ggtcgccgcctgtacctgccggagatcaattccaacaagccacaggagcgcgccggcgcc
gaacgcaccgcgatcaatgcgccgatgcagggcaccgcggcagatatcatcaagaaagcc
atggtggccgtggacaactggctggagtcctcggggctggatgcccgagtgattctccag
gtgcacgacgaactggtgctggaagtgcgcgaggacctggtggaccaggttcgtgaggaa
attcgcgggcacatgagcggtgccgcgaccctggatgtgccgctattggtggaagtgggg
gtgggaaataactgggatgaggctcattaa
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