Pseudomonas protegens Cab57: PPC_0147
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Entry
PPC_0147 CDS
T03613
Name
(GenBank) ECF family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_0147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_0147
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPC_0147
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_Tnp_4
PhyR_sigma-like
HTH_31
HTH_23
HTH_36
HTH_11
HTH_40
Fe_dep_repress
HTH_24
GerE
HTH_SB
HTH_38
Motif
Other DBs
NCBI-ProteinID:
BAO59494
LinkDB
All DBs
Position
169739..170248
Genome browser
AA seq
169 aa
AA seq
DB search
MQATTDGNAQLHRLYQDHHGWLQGWLRKRLGDREHAADVAQDTFLRLLLSGRFPGQQESR
SYLAQIARNLVVDQWRRARIERAYLESIAHLPEPQTPSLESRALILETLMQIDAMLDRMP
DKVRQAFVMSQFEGLGYAQIAERLEVSVSSVQKYMTRAIQACYQVLYAE
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccaccactgacggcaacgctcaactccatcgtctgtatcaggatcatcacggc
tggttgcaaggctggttgcgcaagcgcctgggcgatcgcgagcatgccgcggacgtggcg
caggataccttcctgcgcctcttgctctcggggcgttttcccgggcagcaggaaagccgc
agctacctggcgcagatcgcccgcaacctggtggtcgaccaatggcggcgcgcgcgcatc
gagcgcgcctacctggaaagcatcgcccacttgccggagccgcagaccccctccctggaa
agccgcgcgctgattctcgaaaccctgatgcagatcgacgccatgctcgaccgcatgccg
gacaaagtgcgccaggcctttgtcatgtcgcagttcgaggggctgggctatgcgcagatt
gccgagcgcctggaggtttccgtcagctcggtgcagaagtacatgacccgggcgatccag
gcttgttaccaggtgctctacgcagaatga
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