Pseudomonas protegens Cab57: PPC_0302
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Entry
PPC_0302 CDS
T03613
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPC_0302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppro03019
]
PPC_0302
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_0302
Enzymes [BR:
ppro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPC_0302
Messenger RNA biogenesis [BR:
ppro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PPC_0302
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PPC_0302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Cys_Met_Meta_PP
SNF2-rel_dom
TrmB
Motif
Other DBs
NCBI-ProteinID:
BAO59649
LinkDB
All DBs
Position
336916..338850
Genome browser
AA seq
644 aa
AA seq
DB search
MHSTLEQVFGYPQFRPGQEAAVSAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQRHGIAAASIDSAQGRDEANEVMARARSGELKILMISVERLKNERFR
NFLQQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFNIPQALLLTATATPKVIADM
QAKFAIAQQDVVTTGFYRPNLNLLVEPVPGADKRRRLVQWMSARAGQPSIVYVTLQKTAE
QIAEHLSQQGIAAEAYHAGLPHEQRESIQRRFMEGRSHCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELSGIRCVLEELQ
ASAADGQWEFLLGPLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKLLLETEAL
LARFEGERRDFVEAVINTSSRARTWATVNFDALYEQYQAPRNRVVKALDYFQEKGWVELE
SKQMTEVYSLLQTDFDLAALSADLHGYFTRHEGSEIARIHAMLDLFATEQCLGYRLAEYF
GDRHAPQRCGHCSVCHGQVARLPEPPVLSALVDKSFDGLCGHFIHRHQQHTGDVPGAERL
TRFLCGISVPLFTRLKARSIPGFAVLEDYPYAAVRAWCEAHLPG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcacagcaccctggaacaggtcttcggttatccacagtttcgtccgggccaggaggcc
gcggtcagcgcggtgctcgccgggcgctcggcggcagcgatctttcccaccggctcgggc
aagtccctgtgctaccagttgccggccctgctgctgccgcacctgaccctggtggtctcg
ccgctgctggcgctgatgcaggaccagttggccttcctccagcgccacggcattgccgct
gccagcatcgactcggcccagggccgggatgaagccaatgaggtcatggcccgggctcgt
tccggggagctgaagatcctgatgatctcggtggagcggctgaagaacgaacgctttcgc
aattttctgcaacaggtgcccatctccctgctggtggtggacgaggcgcactgcatctcc
gaatggggccacaacttccgccccgactacctgaaactgccggactaccagcgccagttc
aacatcccccaggccctgctactgacggccacggcgacccccaaagtgatcgccgacatg
caggccaagttcgccatcgcccagcaggacgtagtaaccaccggtttctaccggcccaac
ctcaacctgctggtggagccggtaccgggggccgacaagcgtcggcggctggtgcagtgg
atgagcgcccgggccgggcagccgagcattgtctacgtgaccctgcagaaaaccgccgag
cagatcgccgagcacctgagccagcaaggcatcgccgccgaggcctatcacgccggcctg
ccccatgagcagcgcgagtcgatccagcgtcgcttcatggagggccgcagccactgcatc
gtcgccaccatcgccttcggcatgggcatcgacaagagcgacatccgcaacgtggtgcac
ttcgatctgcccaagtccatcgagaactacagccaggaaatcggtcgtgccgggcgcgac
ggccagccttcggattgcctggtgctggccaaccgcgacagcctcaacgtgctggaaaac
ttcgtctacggcgacaccccggaattgagtggcatccgttgtgtgctggaggagttgcag
gcatcggcggcggacgggcaatgggagttcctgctcggccccctggcggaccagagcaac
attcgccaactgccactcaagaccttgctggtgcagttggaactgcggggcctgatcgcg
ccgcgctatgcctatttcgcggaatatcgcttcaaactgctgctggaaaccgaggccctg
ctggcgcgtttcgagggcgagcggagggacttcgtcgaggccgtgatcaacacttcaagc
cgcgccaggacctgggccacggtgaacttcgacgcgctctacgagcagtaccaggcgccg
cgcaaccgggtggtcaaggccctggattacttccaggaaaaaggctgggtagagctggaa
agcaagcagatgaccgaggtctacagcctgttgcagacggactttgacctggcggcactg
agtgccgacctgcacggttatttcacccgccacgagggcagtgagattgcgcggatccac
gccatgctcgacctgttcgccaccgagcagtgcctggggtaccgcctggcagagtatttc
ggcgaccggcacgcacctcagcgttgcgggcattgttcggtgtgccatggccaggtggcg
cggctgccggagccgccggttctgtccgcgcttgtggataagagtttcgacgggctgtgt
ggccactttatccacaggcaccagcagcacaccggcgatgtacccggggcggaacgcctg
acccgttttctctgtggtatcagcgtgccgttgttcacccggctcaaggctcggagcatc
cccggtttcgcggtactggaagattacccttatgccgcggtgcgggcgtggtgcgaggcc
catttgccaggctaa
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