Pseudomonas protegens Cab57: PPC_0753
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Entry
PPC_0753 CDS
T03613
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PPC_0753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_0753
Enzymes [BR:
ppro01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PPC_0753
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PPC_0753
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
BAO60100
LinkDB
All DBs
Position
859830..863522
Genome browser
AA seq
1230 aa
AA seq
DB search
MTAQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEAAGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDETSAPDGLIVELREQYPVEQWAACANRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGQVLRDYWRLFCYPMQGD
ALNWVRSHWVGPAELMPRVRAMFGNERRDPPEQTPSELIEACLQERREALVQIKAPWREW
AAQLREICLQGVASKSVDGRKMQARFFEPWFEKISAWAEDESVEQLDIGTGFTRLTPEGM
SEAWKGAAPDHPGLDAMAGLKASLDALPSPDAAVLQHAAQWVGARFEEEKRRRAEMGFDD
MLLRLDSALQSDGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEANDPETGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSQAMVSAVNHVFLQAEQRPQ
GQGAFLFREADGENPVPFLAVAAQGRKEQLLVDGQPVPALNFWQLPSEQPLSGAQYRQHQ
AAACATAIVGLLNGGQQGRSGFVREQQALKGLLPADIAILVRDGKEAQAVRGELAARGVR
SVYLSDKDSVFAAQEARDVLVWLKACAEPDVERPLRAALASLTLNLPLLELERLNQDELA
WEARVMQFRGYRAIWRSQGVLPMLRRLLHDFQLPQALMARSDGERVLTNLLHLSELLQQS
AAELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSTKPVDGSRLPLHYHDAAGKPQVSLRPTPELIALADEERLAEDLRLLYVALTRAQHACW
LGVADLKRGNHSSSVLHLSALGYLLGGGDVLGESSALLRWLLDLQQGCAAIGVSELPVVD
DQRYRPPRNEATLLAPLTPSRRAAENWWIASYSALRISDILGAGSTEAPENPQAQKLFDD
ERLDPEAPRETLASGGDIHRFPRGPNPGTFLHGLLEWAGEEGFAAAPEAIEDAVARRCNR
RGWQGWIPTLSDWLQHLLQAPLPLGEGQAPVVLGQLTQYRVEMEFWFASHKVDVLKLDER
VRQQTHQGAPRVTAEPVLLNGMFKGFIDLTFEHQGRYYVADYKSNWLGADDAAYTEQAME
QSILDNRYDLQYVLYLLALHRQLKARLADYDYDRHVGGALYLFLRGTRAASQGAYFVRPP
RQLIEQLDRMFQGQPEPPKAEPAWEQGVLL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgactgcacaagctcccctggccctggcatttcctctgcgcggcagccagttgatcgag
gccagtgccggtaccggcaagaccttcaccatctccgcgctctacttgcgcctggtgctg
ggccatggcggtgaggcggcgggtttcgggcgtgaattgctgccgccgcagatactggtg
gtgacctttaccgatgccgccaccaaggaattgcgcgagcgcattcgcacgcgcctggcg
gaagccgcgcgcttctttcgcgatgaaaccagcgcccccgatggcctgatcgtcgagttg
cgtgagcaataccccgtcgagcagtgggccgcctgtgccaatcgcctggacatcgccgcg
caatggatggatgaggccgcggtctcgaccatccacagttggtgccagcgcatgttgcgc
gaacatgcgttcgacagcggcagcctgttcacccagaccctggaaaccgaccacagcgac
ctgctgggccaggttctgcgcgattactggcggctgttctgctacccgatgcagggtgat
gccctgaactgggtgcgcagccattgggtcgggccggccgaactcatgccccgagtgcgg
gcaatgttcggcaacgagcgtcgggacccacccgaacagacgccgagcgagttgatcgaa
gcctgcctgcaagaacgtcgtgaagccctggtgcagatcaaggcgccctggcgcgagtgg
gccgcgcaactgcgggagatctgcctgcaaggcgtggccagcaagagcgtcgacgggcgc
aagatgcaggcccggttcttcgagccctggttcgaaaagatcagtgcctgggccgaggac
gaatccgtcgagcagctggacatcggcaccggcttcacccgcctgacccccgaaggcatg
agcgaggcctggaaaggcgcggcccccgatcaccccgggctcgacgccatggccgggctc
aaggccagcctcgatgccttgcccagcccggatgcggcggtcctgcaacacgccgcgcaa
tgggtgggggcacgtttcgaagaagagaagcggcggcgcgccgagatgggcttcgacgac
atgctgctgcgcctggacagcgccctgcagagcgatggcggcgagcgcctggcgaccctg
attcgcgagcagttcccggtggccctgatcgacgaattccaggacaccgacccggtgcag
taccggatcttcgaaagcatctaccggatcgaggccaacgaccccgagaccggcctgttc
ctgatcggcgatcccaagcaggcgatctacgccttccgtggcgccgatatctacacctac
ctgcgggcacgccaggccaccagcgggcgcctgcacaccctgggcaccaacttccgttcc
agccaggcgatggtcagcgcggtcaaccatgtgttcctgcaagccgaacagcggccgcag
ggacagggagccttcctgtttcgcgaagcggatggcgagaacccggtgccattcctggcg
gtggccgcccaggggcgcaaggagcaactgctggtcgacggccagccggtgccggcactt
aacttctggcaattgccttcggaacagccgctgtccggggcccagtatcgccagcatcag
gcggcggcttgcgccactgcgattgtcggcctgctcaatggcggccagcaggggcgcagt
gggtttgtccgtgagcagcaagcgctgaaaggcttgctaccggcggatatcgcgatcctg
gtgcgcgatggcaaggaggcccaggccgtgcgcggcgagctggcggcccgcggggtgcgc
agtgtgtacctgtcggacaaggactcggtgttcgccgcccaggaagcccgggatgtgctg
gtgtggctcaaggcttgcgccgagccggacgtggagcggccgctgcgcgcggccctggcg
tccctcaccctgaacctgccgctgctggagctggagcggctcaaccaggatgaactggcc
tgggaagcgcgggtcatgcagttccgtggctaccgggcgatctggcgcagccagggcgtg
ctgcccatgctgcggcgcctgctgcatgacttccagctgccccaggcgctgatggcccgc
agtgatggcgagcgggtgctgaccaaccttctgcacctgtccgagctgctgcaacaaagc
gccgccgaactcgacggcgagcaggccctgatccgccatctggccgagcacctggcgctg
tccgggcaggcgggggaggagcagatcctgcgcctggaaagcgatgagcaactggtcaag
gtggtgaccatccacaagtccaagggcctggaataccccttggtgttcctgcccttcatc
tgttccaccaagccggtggatggcagccgcttgccgctgcattaccacgatgctgccggc
aagccccaggtcagcctgcggcccaccccggagctgattgccctggccgatgaagagcgc
ctggcggaagacctgcggctgctctatgtggccctgaccagggcccagcatgcctgctgg
ctgggggtggccgatctcaagcggggcaatcacagcagctcggtattgcacctttcggcc
ctgggttacctgctggggggcggcgatgtcctgggcgaatccagcgccttgttgcgctgg
ctgctggacctgcagcagggctgcgctgcgattggcgtgtccgagctgcccgtcgtcgat
gaccagcgctatcggccaccgcgcaacgaggccaccctgctggcgccgctgacgcccagc
cgccgcgccgcggaaaactggtggattgcctcctacagtgccttgcgcatcagcgacatc
ctgggggcgggcagcaccgaggcgccggaaaacccccaggcgcagaaactcttcgacgac
gaacgcctggaccccgaagctcctcgggaaaccctggccagcggcggcgatatccaccgc
ttcccccgcggcccgaaccccgggaccttccttcatggcctgctggagtgggctggggag
gagggttttgccgctgcccccgaggcgatcgaggacgccgtggcccggcgctgcaatcgc
cgcggctggcaaggctggatcccgaccctgagcgactggctgcagcacctgctgcaagcg
cccttgcccctgggcgagggccaggcaccggtggtgctcgggcagttgacccagtaccgg
gtcgagatggagttctggttcgccagccacaaggtcgatgtgctcaagctcgatgagcgg
gtacgccagcaaacccatcagggcgcgccccgagtcacggccgagccggtattgctcaac
ggcatgttcaagggttttatcgacctgaccttcgaacaccagggccgctattacgtggcc
gactacaaatccaactggctgggcgcggacgacgcggcctacaccgagcaggccatggaa
caatcgattctcgacaaccgttacgacctgcaatacgtgctgtacctgctggccctgcac
cgacaattgaaggcccggctggcggactacgactacgatcgccatgtgggcggcgccttg
tacctgttcctgcggggcacccgtgccgccagccagggggcctacttcgtccggccgcct
cgacagttgatcgagcaactggaccgcatgttccagggccagcccgagccacccaaggcc
gagcccgcctgggagcagggagtgctgctatga
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