Pseudomonas protegens Cab57: PPC_0882
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Entry
PPC_0882 CDS
T03613
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPC_0882 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppro03019
]
PPC_0882 (pnp)
03016 Transfer RNA biogenesis [BR:
ppro03016
]
PPC_0882 (pnp)
Enzymes [BR:
ppro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PPC_0882 (pnp)
Messenger RNA biogenesis [BR:
ppro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PPC_0882 (pnp)
Transfer RNA biogenesis [BR:
ppro03016
]
Prokaryotic type
tRNA degradation factors
PPC_0882 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
BAO60229
LinkDB
All DBs
Position
992477..994582
Genome browser
AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQSVIKAVKELAAEAAKPTWDWAAAPEA
TELLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSAADVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaaaaaattccagttcggtcagtcgaccgtaaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtggttggcgccaagcaagccgatccaggcaagggcttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacctcgcgtctgatcgaccgtccgatccgc
cctctgttcccagaaggcttcatgaacgaagtgcaggtagtctgcaccgtggtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgccctggccatt
tccggcattcctttcgacggcccgatcggcgccgctcgcgtggcattccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactggctgcttcgagcctggacatggtcgtg
gccggtaccgaagaagccgtactgatggttgaatcggaagccaaagagctgaccgaagac
cagatgctgggcgctgtactgttcgcccacgacgaattccagtcggtgatcaaggctgtc
aaagagctggccgccgaagctgccaaacctacctgggattgggctgctgccccagaagcc
accgaactgctgggcgctatccgtgccgagttcggcgaagccatctcccaggcttacacc
atcaccgtcaaggccgaccgttacgctcgcctgggcgagctgaaagaccaggtggtcgcc
aagctctccggtgaagaaggccagccttcggctgccgacgtcaaagccgctttcggcgag
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccacgtatcgacggccgc
gacactcgcactgtacgtccgctgaacatcgaagtcggcgtactgcccaagactcacggt
tcggccctgttcacccgtggcgaaacccaggccctggtggttgcgaccctgggtactgcc
cgtgacgcacagctgctggacaccctggaaggcgagaagaaagaccccttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggcggcgctggtcgtcgt
gaaatcggtcacggccgtctggcccgtcgctcggtccaggccatgctgccagccgccgac
gtgttcccttacaccatccgcgtagtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtgtgcggtgcttccctggcgctgatggacgctggcgtgccgatgaaggcg
ccggttgccggtatcgccatgggcctggtcaaggaaggcgagaagttcgccgttctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aaaggcgtcaccgcgctgcagatggacatcaagatcaaaggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggtcagatgaaccag
atcatcggtcagtcccgtaccgagctgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaagatccgtgacgtcatcggtaaaggcggcgccaccatccgcgcgatc
tgtgaagaaaccaaggcttcgatcgacatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagctgcagaggccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctacgtcggcaaggttgagcgcatcgtcgacttcggtgccttcgtc
aacatcctgccgggcaaggatggtctggtgcacatctccatgctgagcgacgctcgcgtt
gagaaagtcaccgacatcctgaaagaaggtcaggaagtggaagtgctggtactggacgtg
gacaaccgcggccgtatcaagctgtccatcaaagacgtggcagcagccaaggcttcgggc
gtttaa
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