Pseudomonas protegens Cab57: PPC_0950
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Entry
PPC_0950 CDS
T03613
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02020
Two-component system
ppro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_0950
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PPC_0950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_0950
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPC_0950
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
DUF4741
S1_RRP4
Motif
Other DBs
NCBI-ProteinID:
BAO60297
LinkDB
All DBs
Position
complement(1073016..1074467)
Genome browser
AA seq
483 aa
AA seq
DB search
MTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSDPLADNTESKPNTEI
QEPSYQETAPTVDNLEDGEWNERIPNELPVDTAWEDVYQTSASSLPSSDDDEWDFTTRTS
AGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEILEAFDPELDIELDE
IEAVLHRIQQFEPAGIGARNLGECLLLQLRQLPAKTPWLGEAQRLVSDYIDLLGSRDYSQ
LMRRMKLKEDELRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRKDNERWLVELNQESV
PRLRVNAQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETLMKVATQIVEHQRGF
LEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELKYFFSSHVSTSEGGE
CSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAKYRESLGIAPSSERK
RLM
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgacaccgcagctgcaacaggccatccgcctgctccaattgtcgaccctggacctgcaa
caggaaatccaggaagccctggagtccaacccgatgctcgagcgccaggaagaaggcgac
gacttcgacaacagcgaccccctggccgacaacaccgagtccaaacccaataccgagatc
caggagccctcctaccaggaaaccgcccccacggtggacaacctcgaggacggtgagtgg
aacgagcgcatccccaacgaactgccggtcgacaccgcctgggaagacgtctaccagacc
agcgccagcagcctgcccagcagcgatgacgacgagtgggacttcaccacccgcacttcg
gcgggcgagagcttgcagagccacctgctctggcaactgaacctggcgccgatgtcggac
accgaccgcctgattgccgtgaccctgatcgactgcatcaacaatcagggctacctggac
gaaaccctcgaggagatcctcgaagccttcgatccggaactggacatcgaactggacgag
atagaagccgtcctgcaccgcatccagcaattcgaacccgcgggcatcggtgcccgcaac
ctgggcgagtgcctgttgctgcaactgcgccagttgccggcgaaaacgccctggctgggc
gaggcccagcgcctggtcagtgactacattgaccttctgggcagccgcgactacagccag
ctgatgcggcgcatgaagctcaaggaagatgaactgcgccaggtcatcgagctggtgcag
agcctcaacccccgtcccggatcgcagatcgaatccagcgaagccgaatacgtggtcccg
gacgtcatagtgcgcaaggacaacgaacgctggctggtggaactgaatcaggaatccgtg
ccgcgcctgcgggtcaacgcccagtacgccggttttgtacgccgcgccgacaccagcgcc
gacaacaccttcatgcgcaaccagttgcaggaagcccgctggttcatcaagagcctgcaa
agccgcaatgaaaccctgatgaaggtcgccacccagatcgtcgagcaccagcgcggcttt
ctcgaatatggcgatgaagcgatgaagccgctggttctgcacgatatcgccgaggcggtg
ggcatgcacgaatcgacgatttcccgggtgaccacgcaaaaattcatgcataccccacgg
ggcatatatgagctgaaatactttttctccagccacgtcagcacttcggaaggcggtgaa
tgctcgtccacggcgatccgcgcgatcatcaaaaaattggtggccgcggaaaatcagaaa
aagccgttgagtgacagcaagatcgctggtttactggaggcacaaggcattcaggtagcc
cgtcgtaccgtcgccaagtaccgcgaatcccttgggatcgcgccttccagcgaacgtaag
cggttgatgtag
DBGET
integrated database retrieval system
