Pseudomonas protegens Cab57: PPC_1229
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Entry
PPC_1229 CDS
T03613
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03030
DNA replication
ppro03430
Mismatch repair
ppro03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PPC_1229 (dnaE)
03430 Mismatch repair
PPC_1229 (dnaE)
03440 Homologous recombination
PPC_1229 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppro03032
]
PPC_1229 (dnaE)
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_1229 (dnaE)
Enzymes [BR:
ppro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PPC_1229 (dnaE)
DNA replication proteins [BR:
ppro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PPC_1229 (dnaE)
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PPC_1229 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
BAO60576
LinkDB
All DBs
Position
1377963..1381484
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKALAGMGMPAVAVTDQNNMCSLVKFYKTSMGAG
IKPICGADLWLSNKDPDNPLSRISLLVMNAVGYRNLTELISRGFIDGQRNGQIIIEREWV
AEAAEGLIMLSAAKEGEIGMALIAGDLEVAETLAREWMAVFPERFYLEVQRTNRPNDEEQ
LHAAVALADKIGAPLVATNDVRFIKQEDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIEVKLGKHFLPDYPIPDGMTIDEYFRKVSFDGL
EERLSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVGEEPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYDGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCASNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRIMKLRLDAPDVNTSEFKFTVNDEGRIVYGLGAI
KGVGEGPVEAITEAREEGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPHFFDEP
KAYQANIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGVFVDEDADVYANHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKIHSDALKGDQLRWLGDLFKRHRGACPITMEYTRDDAKAL
LQFGENWRIDPADSLIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcacctgcgcctgcacactgaatattccctggtcgacggtctg
gtgcggatcaagccgctggtcaaggcgctggccggcatgggcatgccggcggtggcggtc
accgaccagaacaacatgtgttccctggtcaagttctataaaaccagcatgggtgcgggg
atcaagccgatctgcggcgccgacctgtggctgtcgaacaaggacccggataaccccctg
agccgcatcagcctgctggtgatgaacgccgtgggttaccgcaacctgaccgagctgatt
tcccgcggcttcatcgatggccagcgcaacggccagatcatcatcgagcgtgagtgggtg
gcggaggccgcggaaggcctgatcatgctctcggcggccaaggagggcgagatcggcatg
gccctgatcgccggcgatctcgaggttgccgagaccctggcccgggagtggatggccgta
ttccccgagcgcttctacctggaagtgcagcgtaccaaccgccccaacgacgaagagcaa
ttgcacgccgccgtggccctggccgacaagatcggcgcgccgctggtggctaccaacgat
gtgcgtttcatcaaacaggaagacttcgaagcccacgaaacccgggtttgcatcggtgaa
ggccgggccctggacgatccgcgccgctcaaagaactacagcgaccagcagtatctgaaa
agcgccgaagaaatggccgagctgttcagtgacctgcccgaggcgctggaaaacactgtc
gagatcgccaagcgctgcaacatcgaggtcaagctgggcaagcacttcttgcctgactac
ccgattcccgatggcatgaccatcgatgagtattttcgcaaggtttccttcgacggcctg
gaagagcgcctcagcgtgctgctgcccaaggacaccaccgaggactacgaggccaagcgt
caggtctacgtcgaccggctgaatttcgaactggatatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggactttatccagtgggccaagaacaacggtgtaccggta
ggtccgggccgggggtcgggtgccggttccctggtggcctatgtgcagaagatcactgac
ctcgatccgctggaatacgacctgctgttcgaacgtttccttaacccggaacgggtctcc
atgcccgacttcgacgtcgacttctgcatggacggtcgcgaccgggtgatcgactacgtg
gccgagaaatacggccgcaacgcggtgagccagatcatcaccttcggttccatggcggcc
aaggcggtggtccgtgacgtggcgcgggtgcagggcaagtcctacggcctggccgaccgt
ctgtcgaagatgatccccttcgaagtcggcatgactctggaaaaagcctacgagcaagag
gagatcctgcgggacttcatcaaggtcgatgaagaggcggcggaaatctgggagatggcg
cgcaagctcgagggcgtggtgcgcaacgtcggcaagcacgccggtggtgtggtgatcgcg
cccaccaagctcaccgacttctcgccgatctactgcgacgaagagggcggcggcctggtg
acccagttcgacaaggatgacgtcgaggcggccggcctggtgaagttcgacttcctcggt
ctgcggaccctgaccatcatcgactgggcactgaaaaccattaaccgcgaccgcgccaag
gtcggcgaggaaccgctggatatcgcctttatcccgctggacgacaagccgacctacagc
ctgttgcagaaagctgaaaccaccgcggtattccagcttgaatcccggggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggtggccctgttc
cgtccggggccgctgcaatcgggcatggtggatgacttcatcaaccgcaagcacggccgc
gccgagctggcctacccgcacccggattatcagtacgacggcctgcagccggtactggcg
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagatcgcccaggtcatggcc
ggctacaccctgggcggtgcggacatgctgcgtcgagccatgggtaagaaaaagcccgag
gagatggccaagcagcggggcggcttcattgaaggttgcgccagcaacaacatcgatgca
gacctggcgggcaacatcttcgacctggtggaaaagttcgccggctacggcttcaacaaa
tcccactccgccgcctacggcctggtgtcgtaccagaccgcctggctcaaggcgcactac
ccggcgccgttcatggcggcggtactctccgcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcggatcatgaagttgcgcctcgacgcgccggacgtgaacacc
tccgagttcaagttcacggtgaacgacgaaggtcgcatcgtctacggcctgggggcgatc
aagggcgtcggcgaggggccggtggaagccatcaccgaagcccgcgaggaaggccctttc
aaggatctgttcgatttctgcgccagggtcgacctcaagcgcatcaacaagcggaccctg
gacggcttgattcgaagcggcgccctggaccgcctggggccgcacttcttcgatgagccc
aaggcctaccaggccaatatcgaccagaaccgcgccgtgctgctggcggccatggaagaa
gcgatcaaggccgcggagcagaccgcgcgtacccacgacagtggccacgccgacctgttt
ggcggggtcttcgtcgatgaggatgcggatgtctacgccaaccatcgcaaggccaaggaa
ctgaccctcaaggaacgcctgaaaggcgagaaagataccctggggctgtacctgaccggg
cacccgatcgacgaatacgaaggcgagatccgtcgtttcgcccgccagcgcatcatcgac
ctgaagccggcccgggatacccagaccgtggccggcatgatcatcgccctgcgggtgatg
aagaacaaaaagggcgacaagatgggcttcatcaccctcgacgaccgctcggggcggatc
gaggcctcgctgtttgccgatgcgttccattcggcgcagtcgctgctgcagaccgacgcc
atggtggtggtggagggcgaggtcagcaacgacgacttctccggcggcctgcgcctgcgg
gtcaagcgggtgatgagcatggaggatgcgcggaccaacctggcggaaagcctgcgcctg
aagatccacagcgatgccctgaagggcgatcagctacgctggctgggtgatctgttcaag
cgccaccgcggcgcatgcccgatcaccatggagtacacccgggacgacgccaaggccctg
ctgcagtttggcgagaactggcggatcgatccggcggacagcttgattcaagccctgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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integrated database retrieval system
