Pseudomonas protegens Cab57: PPC_1242
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Entry
PPC_1242 CDS
T03613
Symbol
truD
Name
(GenBank) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppro03016
]
PPC_1242 (truD)
Enzymes [BR:
ppro01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
PPC_1242 (truD)
Transfer RNA biogenesis [BR:
ppro03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PPC_1242 (truD)
Prokaryotic type
PPC_1242 (truD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruD
LacI
Motif
Other DBs
NCBI-ProteinID:
BAO60589
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All DBs
Position
1393067..1394125
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AA seq
352 aa
AA seq
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MNELQLLGPRAYGDALGSAVLKATAEDFQVDEVLDIPLSGEGEHLWLWVEKRGLNTEEAA
RRIAKAAGVSLRTVSYAGLKDRQALTRQWFSVQLPGKADPDLGAAENHTLKILEATRHKR
KLQRGAHAANGFTLRLTELKADQAAIDERLKRIAAQGIPNYFGAQRFGHDGGNLVDARSW
AARQALPEQRNVRSRLLSTARSYLFNQALAARVADGTWQQAQVGDLLAFTDSRSFFMAGP
DECTDPRLAILDLHPTGPLWGEGESPSGGAVHELEQQMADREAALCQWLIKAGMSHERRI
LRLPIGGLTWHYPEPDILQLEFVLPAGCFATALVRELVDLVPVGQTDSSCAF
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaactgcaattgttgggcccgcgggcctatggcgatgccctgggcagcgccgta
ctcaaggccactgccgaagacttccaggttgatgaagtactcgatatcccgctgagcggg
gaaggcgagcatctgtggctgtgggtggaaaaacgcggcttgaacaccgaggaagcggcg
cggcggatcgccaaggcggcgggggtgtcgttgcgcaccgtcagctatgccgggctcaag
gatcgccaggcgctgacccgccagtggttcagtgtgcaactgccgggcaaggccgatccg
gatcttggcgcagcggaaaatcatactctgaagatccttgaggccacccgccacaagcgc
aaattgcagcgtggggcccatgccgccaatggctttaccctgcgcttgacagagctcaag
gcggatcaggcagccatcgatgagcgcctgaagagaattgctgctcaaggtattcccaac
tatttcggcgcccagcgcttcggccacgacgggggcaacctggtcgacgcccgtagctgg
gctgcccgccaggcgctgccggagcagcgcaatgtgcgttcgcgcctgttgtccaccgcc
cgcagctacctgttcaaccaggcgctggcagcgcgagtggcggatggcacttggcagcag
gcgcaagtgggcgacttgctggcatttaccgacagccgcagctttttcatggcaggcccg
gatgaatgcacggatccgcgcctggcaattcttgacttgcatcccacaggcccgttgtgg
ggcgaaggcgagtctccgtcgggtggtgcggttcatgaacttgaacagcagatggccgac
cgcgaggcggcactgtgccaatggctgataaaagccggcatgagccacgaacgacgcatc
ctgcggctgcccattggcggtttgacgtggcattatcccgagcctgatattctgcaactg
gaattcgtcctcccggccggatgtttcgccaccgccttggtgcgtgaactcgtcgatctg
gtgccggtggggcagacggacagctcatgcgcattctga
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