Pseudomonas protegens Cab57: PPC_1603
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Entry
PPC_1603 CDS
T03613
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ppro03009
]
PPC_1603
Enzymes [BR:
ppro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PPC_1603
Ribosome biogenesis [BR:
ppro03009
]
Prokaryotic type
rRNA helicases
PPC_1603
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BAO60950
LinkDB
All DBs
Position
1766739..1768103
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AA seq
454 aa
AA seq
DB search
MHIFEVAPVFSQFALHERLLKAVAELKFVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTA
AFVLPILNRLIGPAKIRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGLITGGEDFK
VQAAMLRKVPDILIGTPGRMLEQLNAGNLDLKEVEVLVLDEADRMLDMGFAEDVQRLVDE
CPNRQQTMLFSATTGGSGLREMVAKVLNNPEHLQLNSVSQLNETTRQQIITADHNQHKEQ
IVNWLLANETYQKAIVFTNTRAMADRIYGRLVAQDYKAFVLHGEKDQKDRKLAIDRLKQG
GVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGNDGLAISLICHGDW
NLMSSIERYLKQSFERRTIKEVKGTYSGPKKVKASGKAVGVKKKKTDAKGDKKKAVAKAP
TKRKTANRPKSDSLVSQDGLAPLKRRKPQAPAAE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
ttgcatatcttcgaggtagcacccgtgttttcccaattcgccctgcacgaacgcctgctc
aaagccgtggccgagcttaaatttgtcgagccgacgccggtgcaagcagcggctattccg
ctcgcgctgcaagggcgtgacctgcgggtgacggcacagaccggtagcggcaagaccgcg
gcttttgtcctgccgatcctcaatcgcctgatcggcccggcgaagatccgcgtcagcatc
aagaccctgatcctgctgccgactcgggaactggcccagcagactctcaaggaagtcgag
cgtttctcccagttcaccttcatcaagtcgggcctgatcaccggtggtgaagacttcaag
gtccaggctgccatgctgcgcaaggtgccggacatcctcatcggcactccggggcgcatg
ctggagcaactcaatgccggcaacctggacttgaaggaagtcgaagtgctggtgctcgac
gaagccgaccgcatgctcgacatgggctttgccgaagacgtgcagcgcctggtggacgaa
tgcccgaaccgccagcagaccatgctgttctccgccaccactggcggctccggcctgcgg
gaaatggtcgccaaggtcctcaacaaccctgagcacctgcaactcaacagcgtcagccag
ctgaacgaaaccacccgtcagcagatcatcaccgccgaccacaaccagcacaaagaacag
atcgtcaactggctgctggccaacgagacctaccagaaggccattgtcttcaccaacacc
cgggccatggccgaccgcatctacggccgcctggtggcccaggactacaaggctttcgtc
ttgcacggtgaaaaggaccagaaggaccgcaagctggccatcgaccgcctgaagcagggc
ggggtgaagatcctcgtggccactgacgtcgctgcccgcggcctggacgttgacggcctg
gacctggtgatcaacttcgacatgccgcgcagcggcgacgaatacgtgcaccgcatcggc
cgcaccggccgtgccggcaacgatggcctggccatctcgctgatctgccacggcgactgg
aacctgatgtcgagcatcgagcgctatctcaagcagagcttcgagcgccgcaccatcaag
gaagtcaaaggcacctacagcgggccgaagaaggtcaaggcctccggcaaggcggtgggc
gtgaagaagaaaaagaccgacgccaagggcgacaagaaaaaggccgtggccaaggccccg
accaagcgcaagaccgccaaccggcccaagagcgacagcctggtcagccaggatggcctg
gcgccgctcaagcgccgcaagccacaggcccccgccgctgaataa
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