Pseudomonas protegens Cab57: PPC_2011
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Entry
PPC_2011 CDS
T03613
Symbol
fadB
Name
(GenBank) multifunctional fatty acid oxidation complex subunit alpha
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro00071
Fatty acid degradation
ppro00280
Valine, leucine and isoleucine degradation
ppro00310
Lysine degradation
ppro00362
Benzoate degradation
ppro00380
Tryptophan metabolism
ppro00410
beta-Alanine metabolism
ppro00640
Propanoate metabolism
ppro00650
Butanoate metabolism
ppro00907
Pinene, camphor and geraniol degradation
ppro00930
Caprolactam degradation
ppro01100
Metabolic pathways
ppro01110
Biosynthesis of secondary metabolites
ppro01120
Microbial metabolism in diverse environments
ppro01200
Carbon metabolism
ppro01212
Fatty acid metabolism
Module
ppro_M00087
beta-Oxidation
ppro_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
PPC_2011 (fadB)
00650 Butanoate metabolism
PPC_2011 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
PPC_2011 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
PPC_2011 (fadB)
00310 Lysine degradation
PPC_2011 (fadB)
00380 Tryptophan metabolism
PPC_2011 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
PPC_2011 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
PPC_2011 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
PPC_2011 (fadB)
00930 Caprolactam degradation
PPC_2011 (fadB)
Enzymes [BR:
ppro01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
PPC_2011 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
PPC_2011 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
PPC_2011 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
PPC_2011 (fadB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
DUF6383
Motif
Other DBs
NCBI-ProteinID:
BAO61358
LinkDB
All DBs
Position
2215174..2217321
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELNFDLKGESVNKFNRLTLNELRQAVDTIKADASIKGVIVSS
GKDVFIVGADITEFVDNFKLPDAELVAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLE
MCLAADYRVMAASAKIGLPEVKLGIYPGFGGTVRLPRIIGADNAIEWIAAGKENRAEDAL
KVGAVDAVVAPDKLKDAALALVKRAISGEFDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFVKLAKTSAAQSLIGLFLNDQEL
KKKAKAYDEIAKDVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL
LVGRVDKGRMTAAKMAEVLNGIRPTLSYGDFGNVDLVVEAVVENPKVKQIVLAEVEGQVK
EDTILASNTSTISISLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSELAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKIMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDDRRSAVDVLYEAKRLGQKNGKGFYAYETDKKGKQ
KKVADPSVLEVLKPIVYEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGALYHPTAKLREMAKNGQSFFG
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgaattg
aatttcgacctcaagggtgagtccgtcaacaagttcaaccgtctaaccctgaacgaattg
cgtcaggctgttgacaccatcaaggcagatgcttcgatcaagggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagtttgtcgacaacttcaagctg
ccggatgccgagctggtggcaggcaacctcgaagccaacaagatcttcagcgatttcgaa
gacctcaacgtgccaaccgttgccgcgatcaacggcatcgccctgggcggcggcctggaa
atgtgcctggcggcggactaccgcgtcatggctgccagtgccaagatcggcctgccggaa
gtcaagctgggcatctacccgggtttcggcggtaccgtgcgtctgccgcgcatcatcggt
gccgacaacgccatcgagtggattgccgccggcaaggaaaaccgtgctgaagacgcgctg
aaagtcggtgccgtcgatgctgtggttgctcccgataaactcaaggatgccgctctggcc
ctggtcaagcgcgccatctccggcgagttcgactacaaggcaaagcgtcagcctaagctg
gaaaagctcaagctcaacgccattgagcagatgatggctttcgaaactgccaaaggtttc
gttgccggccaggcgggtccgaactacccggcgccggtggaagcgatcaagaccattcag
aaagccgccaactttggccgcgacaaggctctggaagtggaagccgccggcttcgtcaaa
ctggccaagacctctgccgcacagagcctgatcggtctgttcctgaacgatcaggagctg
aagaaaaaggccaaggcctacgacgagatcgccaaggacgtgaagcaggctgccgtactg
ggcgccggcatcatgggcggcggtatcgcctatcagtctgcctccaagggcacgccgatc
ctgatgaaggacatcaacgagcacggtatcgagcagggtctggcagaagccgcgaaactg
ctggtaggccgcgttgataaaggccgcatgaccgcagcgaagatggccgaagtgctcaat
ggcattcgtccgaccctgtcctacggtgatttcggcaacgtcgacctggtggtcgaagcc
gtagtcgagaaccccaaggtcaagcagatcgtgctggctgaagtggaaggtcaggtcaag
gaagacacgatcctggcgtccaacacctcgaccatttccatcagcctgctggccaaggcc
ctcaagcgtccggaaaatttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggttgaagtgatccgtggcgagaagtccagcgaactggcggtagcgaccaccgttgcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggctttttggtc
aaccgcgtactgttcccgtacttcggcggtttcgccaagctggtcagtgccggtgtggac
tttgtgcgcatcgacaagatcatggaaaaattcggctggccaatgggcccggcgtacctg
atggacgtggtcggcatcgacactggtcaccacgggcgtgacgtgatggctgaaggcttc
ccggatcgcatgaaggatgatcgccgctcggccgtggacgtgctctacgaagccaagcgc
ctgggccagaagaacggcaagggcttctacgcctacgaaaccgacaagaagggcaagcag
aagaaggtggccgatccgtcggtgctggaagtgctcaagccgattgtctacgagcagcgt
gaagtcaccgacgaagacatcatcaactggatgatgatcccgttgtgcctggaaaccgtt
cgttgcctggaagacggcatcgttgaaaccgctgccgaagctgacatgggcctggtctac
ggcattggtttccctccattccgtggcggtgcgctgcgctacatcgattccatcggtgtt
gccgagttcgttgccctggccgaccagtacgccgatctgggcgcgctgtaccacccgacc
gcgaagctgcgtgaaatggccaagaacggccagagcttcttcggttaa
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