Pseudomonas protegens Cab57: PPC_2014
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Entry
PPC_2014 CDS
T03613
Symbol
topA_1
Name
(GenBank) DNA topoisomerase I subunit omega
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ppro03032
]
PPC_2014 (topA_1)
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_2014 (topA_1)
Enzymes [BR:
ppro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PPC_2014 (topA_1)
DNA replication proteins [BR:
ppro03032
]
Prokaryotic type
DNA Topoisomerases
PPC_2014 (topA_1)
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PPC_2014 (topA_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BAO61361
LinkDB
All DBs
Position
2218975..2221587
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKAAAGE
APALSPKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGSN
VRFEVARENGEAFKPLNEAQAMAALEKLKASAYSVAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVAMARTYIEDEFGNKYLPASPN
VYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMLPAQYLSTTV
SVAAGDFELRAKGRILKFDGYTRVMPQMAKPGDDDVLPEMAQGEVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLEVAEGAESGMRANQPVMT
DIPCQTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVLELIPHKDEIDPKYHFLCEAPQKDPDGRPAVVRYSRKTK
EQYVQTEVDGKPTGWRAFYDGGKWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggtaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggcaagtgccgccaaggagccagccgccaagcgtggcaaggccgctgcgggcgaa
gccccggctctgtcgccgaaggaaaaggctcgcaagcagctggtgtcgcgcatgggcgtc
gatcccgagcacggctggaaagccaagtacgaaatcctccctggcaaggaaaaggtcatc
gaagagctgcgccgccttgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaagccattgcctggcacctgcgggaagccatcggcggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctcccag
ccgggcgagctggacattgatcgagtcaatgcccagcaggcgcgacgcttcctcgaccgc
gtggtgggctacatggtttcgccgctgctgtgggcgaagattgcccgtggcctgtctgcc
ggtcgtgtgcagtcggtagccgtgaagctggtggtggagcgcgagcgtgagattcgtgcc
ttcatcccggaagaatactgggaagtacacgctgacctgggcactgccaagggctcgaat
gtgcgttttgaagtggcccgtgaaaacggtgaagccttcaaaccgctcaacgaagcacag
gccatggccgccctggagaagctcaaggcctcggcctacagcgtcgccaagcgtgaagac
aagccaaccagcagcaagccatcggcgccgttcatcacctctaccctgcagcaggctgcg
agcaatcgcctgggcttcggcgtgaagaagaccatgatgatggcccagcgtctgtatgaa
gccggctacatcacctatatgcgtaccgactccaccaacctctcggccgatgccgtggcg
atggcgcgtacctatatcgaagacgagttcggcaacaagtacctgccggcttcgcccaat
gtctacagcagcaaggaaggggcccaggaggcgcacgaagcgattcgtccgtccgatgtg
aatacccacccaagcaagctgtcgggcatggagcgtgacgccgagcgcctctacgagctg
atctggcgccagtttgtcgcctgccagatgctgccggcgcaatacctgtccaccaccgtc
agcgtcgccgctggcgacttcgagctgcgtgccaagggccgcatcctcaagttcgacggt
tacacccgggtcatgccgcagatggccaagccgggcgatgacgatgtgctgccggaaatg
gcccagggcgaagtgctgaagctgatcaagctcgatccgagccagcacttcaccaagcca
ccggcgcgttactccgaagccagcctggtgaaggaaatggaaaaacgcggcattggtcgt
ccttcgacctatgcggcaatcatttcgaccatccaggatcgcggctacgtgaccctgcac
aaccgtcgtttctattcggaaaagatgggcgacatcgtcactgagcgcctttccgagagc
ttctccaacctcatggactacggcttcaccgccggcatggaagagaatctcgatgacgtg
gcccagggcgagcgcgactggaagaacgtcctcgacgaattctacggtgacttcaagaag
aagctcgaagtggccgagggcgccgaaagcggcatgcgcgccaaccagccggtaatgacc
gatatcccgtgccagacctgcggccggccgatgcagatccgtaccgcctccaccggcgtg
ttcctcggctgctcgggctacagcctgccacccaaggagcgttgcaaggccaccgtcaac
ctggtgccgggcgacgagatcgccgcggatgacgagggtgagtccgaatccctggtactg
cgtggcaagcatcgttgcccgatctgcagtacggcgatggatgcctacctgctggacgaa
aagcgcaagctgcacatctgcggtaacaacccggattgcgccggctacgagatcgaagag
ggcagctaccggatcaaggggtatgaaggcccgagcctggagtgtgataagtgcggcagc
gagatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacactcgcaagctgctgaaaagcggtgacgcggcgccgccgaagatggacccggtg
aagatgcccgagctcaagtgcgagaaggtcaacgacacctacatcctgcgcgatggcgct
tcgggcctgttcctggcggccagtcagttcccaaaaaaccgcgagacccgtgcgccgttg
gtgctggaactgatcccgcacaaggatgagatcgatcccaagtaccacttcctctgcgaa
gctccgcagaaggacccggacggccgccctgcggtggtgcgttacagccgcaagaccaag
gagcagtacgtgcagaccgaagtcgacggcaagccgaccggctggcgtgccttctacgac
ggcggtaaatggaaggtcgaagacaagcgctaa
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