Pseudomonas protegens Cab57: PPC_2332
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Entry
PPC_2332 CDS
T03613
Name
(GenBank) RNA polymerase sigma factor, FecI family
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_2332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_2332
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPC_2332
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
HTH_23
GerE
HTH_11
HTH_24
HTH_Tnp_4
Sigma70_ECF
HTH_3
PhyR_sigma-like
HTH_31
HTH_40
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BAO61679
LinkDB
All DBs
Position
2575262..2575783
Genome browser
AA seq
173 aa
AA seq
DB search
MPADDLSLRCAVTDLYTHHHGWLQGWLRQRLGNAFDAADLAQDTFVRVLKARNTVEIREP
RPYLSRIARGLLIDLFRRRSLEQAYLEALALVPEGEHPSPEEQSVLFQALMEIDRLLDGL
GPKVKQAFLLSQCDGLTYEQIAERLQISVRSVSNYMAKAMEHCCLMQMRMQLS
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgcccgccgacgacttatccctgcgctgtgccgtcaccgacctctacacccatcaccat
ggctggctgcagggctggttgcgccagcgcctgggcaacgccttcgatgccgccgacctg
gcccaggacaccttcgtgcgggtgctcaaggcgcgcaacacagtggagatccgtgagccg
cggccctacctgtcgcgcattgcccggggcctgctgatcgatctgtttcgccggcgttcc
ctggagcaggcctacctcgaagccctggccctggtgcccgagggcgagcacccgtcgccg
gaggagcagagcgtgctgttccaggcgctgatggaaatcgaccggctgctggatggcctg
ggccccaaggtgaaacaggctttcctgctgtcccagtgcgacggcctgacctacgagcag
atcgccgagcgcctgcagatttccgtgcgcagcgtgagcaactacatggccaaggccatg
gagcattgctgcctgatgcagatgcggatgcagctgtcatga
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