Pseudomonas protegens Cab57: PPC_2345
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Entry
PPC_2345 CDS
T03613
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ppro
Pseudomonas protegens Cab57
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ppro03016
]
PPC_2345
Enzymes [BR:
ppro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PPC_2345
Transfer RNA biogenesis [BR:
ppro03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PPC_2345
Prokaryotic type
tRNA splicing ligases
PPC_2345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAO61692
LinkDB
All DBs
Position
2591459..2592685
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AA seq
408 aa
AA seq
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MEHKTYQLLEVANGKPIKMWTQGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTSLTASDLPDNLAGLRSAIEQAVPHGRTSPRS
GRDKGAWGDVPQQTDLAWAALHPRFKAITDKYPALANSNNRQHLGTLGGGNHFIEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIHLAQADMRQHIANLPDRDLAYFEEGSQHFNDYVEAV
AWAQDFARQNRELMMQLVIQATRKVISKPFEVALEAVNCHHNYVQKERHFGEEVLVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKNTFTLADQIRA
TAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaagacctaccaactgctggaagtcgccaacggcaagccgatcaagatgtgg
acccagggcgtgccggtggaaaacgaagcccgccagcaattgatgaacaccgcgaagatg
ccgttcatcttcaagcacctggcggtgatgcccgacgtgcacctgggtaagggttcgacc
atcggtagcgtgatccccacggtgggcgcgatcatcccggctgcggtcggggtggatatc
ggttgcggaatgatcgccgcccgtacctcgctgactgcctccgacctgccggataacctg
gccgggttgcgtagcgccatcgagcaggcggtgccccacggccgtacctcgccccgtagc
ggtcgcgataaaggtgcctggggtgatgtgccgcagcagaccgacctggcttgggcggcc
ttgcatccgcgcttcaaggcgatcaccgataagtacccggcgctggccaacagcaacaac
cgccagcacctgggaaccctcggcggaggtaaccacttcatcgaggtttgcctggatgaa
gccaaccgtgtctggttcatgctccacagcggttcccgtggcgtaggtaacgccatcggc
aacctgttcattcacctggcccaggccgatatgcgccagcacatcgccaacctgccggac
cgcgacctggcctatttcgaggaaggcagccagcacttcaacgattacgtggaggcggtg
gcctgggcccaggatttcgcccggcagaaccgtgagctgatgatgcaactggtgatccag
gccacccgcaaggtgatcagcaagcccttcgaggtggcgctggaggcagtcaactgccac
cacaactacgtgcagaaggagcgccacttcggtgaagaggtgctggtgacccgcaagggg
gcggtgtcggcgaagaagggcgagctggggatcattccgggttcgatgggggccaagagc
ttcattgtccgcggattgggtaacgaggaggcgttctgctcctgcagccacggcgcgggg
cgtaccatgagtcgcaccaaggccaagaacaccttcaccctggccgaccagatccgcgcg
accgcccatgtggagtgccgtaaggacgaagcggtgatcgatgaaatcccgatggcctac
aaggacatcgaccaagtgatgcacgcccagcgcgagctggtggaagtgctgcacaccctg
cgtcaggtggtgtgcgttaaggggtag
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