Pseudomonas protegens Cab57: PPC_2404
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Entry
PPC_2404 CDS
T03613
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_2404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_2404
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPC_2404
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BAO61751
LinkDB
All DBs
Position
2657663..2658169
Genome browser
AA seq
168 aa
AA seq
DB search
MHNHSLSSPVAQLYANHHGWLRGWLHRRLGHSADAEDLAHDTFIRVLRSQEDVRELRQPM
AFLATIANGLLINRWRRQAIERAYLEALAARPVGEEPSPEERHLMIETLLQLDSLLVGLS
SRVRQIFFLSQLDGLTYPQIAAQLGLTVAQVQRAMGKAFSVCYASRFE
NT seq
507 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaccacagcctctcttcgcccgtcgcccagttgtatgcgaaccatcacggctgg
ctgcggggctggctacaccggcgcctggggcacagtgccgatgccgaggacctggcccat
gacacctttatccgggtgctgcgctcccaggaggatgtgcgtgagttgcgccagcccatg
gcctttctggccaccattgccaacggcctgctgatcaatcgctggcgccgccaggcgatc
gaacgggcttatctggaagccctggcggcgcggccggtgggggaggagccttcgccggag
gagcggcatctgatgatcgagaccctgttgcagctggattcgctgctggtggggttgtcg
tcacgggtgcggcagattttctttctgtcccagctcgatggcctgacctatccgcagatc
gctgcgcagttgggcttgaccgtggcccaggtgcagcgggccatgggcaaggcgttcagt
gtctgttacgcgagccgttttgaatga
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