Pseudomonas protegens Cab57: PPC_3634
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Entry
PPC_3634 CDS
T03613
Name
(GenBank) ECF subfamily RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_3634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_3634
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPC_3634
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
GerE
HTH_11
HTH_29
TnsD
HTH_Tnp_ISL3
HTH_38
HTH_28
PhyR_sigma-like
HTH_24
RovC_DNA-bd
HTH_17
HTH_40
HAC6_helical
HTH_Mga
HTH_31
HTH_36
HTH_7
Motif
Other DBs
NCBI-ProteinID:
BAO62981
LinkDB
All DBs
Position
complement(4001736..4002245)
Genome browser
AA seq
169 aa
AA seq
DB search
MNDVVLPTEHTFDNLYREHRSWLESWLRRRLGNAWDAADLSQDTFLRVLGSAQPLAQLQE
PRAYLLTVGKRLLINFHQRRSLEQAYLNALATLPEACVPSPEQRWIVLQALQALDELLDG
LPHPVRRAFLWSQLEGLGYREIAERLRVSERTVKRYMAQAYEHCLLVEL
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgtcgtactgccaacggagcacaccttcgacaacctgtaccgtgagcaccgc
agttggcttgaaagctggctgcggcgacgcctgggcaacgcctgggatgccgccgacctg
agccaggacaccttcctgcgggtgctcggcagcgcccagcccctggcccagttgcaggag
ccgcgggcctacctgctgaccgtcggcaagcgcttgctgatcaacttccatcagcggcgc
agcctcgaacaggcctacctcaacgccctggcgaccctgcccgaggcctgcgtgccttcg
cccgaacagcgctggattgtcctgcaagcgctgcaggcgctggacgagctgctcgatggc
ctgccccatccggtgcgccgggcgtttctctggagccagctggaaggcctgggttaccgc
gagattgccgagcgcctgcgggtgagcgagcgcacggtcaagcgctacatggcccaagcc
tacgaacactgcctgctggtggagctgtga
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