Pseudomonas protegens Cab57: PPC_3638
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Entry
PPC_3638 CDS
T03613
Name
(GenBank) ECF family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_3638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_3638
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PPC_3638
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
Motif
Other DBs
NCBI-ProteinID:
BAO62985
LinkDB
All DBs
Position
4004836..4005345
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AA seq
169 aa
AA seq
DB search
MVPNSSLQHAVGELYVQHHNWVVQLLRRKLGNQDQAMDLAQDTFLRILRSEQLPVLREPR
AYLNTVASRLCGQYFRRQALERAYLESLAQLEPQHQPSPETRLLVLEALDAVGQVLDGLG
SRVREVFLLSQLEGLTYPQIAERQQLSVNVVQKAMLKAYRHCYAAVYPT
NT seq
510 nt
NT seq
+upstream
nt +downstream
nt
atggtgcccaactcttcgctacagcacgccgtgggcgagctctacgtccagcatcacaac
tgggtggtgcaactgctgcgacgcaagctcggtaaccaggaccaggccatggacctggca
caggacaccttcctgcggattctgcgcagcgaacagctgccggtactgcgtgaacccagg
gcctatctgaacaccgtggccagccgtctgtgcggccagtatttccgccgccaggccctg
gagcgggcctatctggaatccctggcgcagttggaaccgcaacaccagccttcaccggaa
acccgcctgctggtgctcgaagccctggacgccgtgggtcaggtgctggacggcctgggc
agccgggtgcgggaggtgtttctgctgtcccagctcgaaggcctgacctacccgcagatt
gccgagcgccaacagctctcggtcaacgtggtacagaaagccatgctcaaggcctaccgc
cactgctacgcggcggtgtatccgacatga
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