Pseudomonas protegens Cab57: PPC_4994
Help
Entry
PPC_4994 CDS
T03613
Name
(GenBank) OprD family outer membrane porin
KO
K18093
imipenem/basic amino acid-specific outer membrane pore [EC:3.4.21.-]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro01501
beta-Lactam resistance
ppro02020
Two-component system
Module
ppro_M00745
Imipenem resistance, repression of porin OprD
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PPC_4994
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
PPC_4994
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ppro02000
]
PPC_4994
01504 Antimicrobial resistance genes [BR:
ppro01504
]
PPC_4994
Transporters [BR:
ppro02000
]
Other transporters
Pores ion channels [TC:
1
]
PPC_4994
Antimicrobial resistance genes [BR:
ppro01504
]
Gene sets
beta-Lactam resistance modules
Imipenem resistance, repression of porin OprD [MD:
M00745
]
PPC_4994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OprD
Motif
Other DBs
NCBI-ProteinID:
BAO64341
LinkDB
All DBs
Position
complement(5553361..5554716)
Genome browser
AA seq
451 aa
AA seq
DB search
MSVYRTSIVLLGLWLGPGGISQAGVEAWEELFTEGEARMFFDNQYFARDYRNGPNNSGRN
RYKPRSERNGYRQEWGQSVQLYYRSGFTPGLLGLGFDAFAMQAFKLDSGGGRTGTGTLAL
DGKGHPRDSHGKVGGALKLKVAEAQLRYGNFTTQAPVLAANNSRIIPGMAYGWQLQRDWD
GLSLEAARLSALSGPTESKARGGISTVYGRLSGARINIDSAQYLGLNYKGEQWRGAYYLG
QLEDVWTQHYLNLGHTLELAGERSLSNTFNLYRTRDSGASLFGPIDNLIASHALAYRFDA
HRLTLAYQRSFSDTPFDYIGFGDGQTGQSIVLANSAPYSDFNGPRERSWQLRYDQRLAWL
GLPDLNLGLRYQRGWGVDGSHAPANSIYRGLYGEDGRHHETDLDLSYTFSSGSLKGLHLR
ATQIWHRGNSAQADGSIDQLRIRVQYPLALF
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtgtatcgcacaagcattgtgctgctggggttgtggctgggcccgggcggtatc
agccaggcgggagttgaggcctgggaggagctgttcaccgagggcgaggcccggatgttt
ttcgataaccagtacttcgcccgggattaccgcaacgggcccaacaacagtggccgtaac
cgctacaaaccgcgtagtgagcgcaatggttatcgccaggagtggggccagtcggtgcag
ctgtattaccgttccggttttacccccgggcttctgggcctggggttcgatgcctttgcc
atgcaggccttcaagctcgacagtggcggtgggcgcaccggcaccggcaccctggcgctg
gacggcaaggggcatccgcgggacagccatggcaaggttggcggtgccctcaagctcaag
gtggccgaggcacagctgcgttatggcaatttcaccacccaggcgccggtactggcggcc
aacaacagccggatcattcccgggatggcctacggctggcagttgcagcgcgactgggac
gggctgagcctggaagcggcgcggctgagtgccttgtccggccccaccgaaagcaaggcc
cgaggcgggatttccacggtatacggacgtttgtccggagcgcggatcaatatcgacagc
gcccagtacctggggctgaactacaagggcgagcaatggcggggggcttattacctgggg
caactggaggacgtctggacccagcattacctcaacctgggccacaccctggaactggct
ggcgagcgcagcctgagcaacaccttcaacctgtatcgcacccgggatagcggcgcctcg
ttgtttggccccatcgacaacctgatcgcctcccacgccctggcgtaccgtttcgatgcc
catcgcttgaccctggcctaccagcgctcgttttcggataccccgttcgactacataggt
ttcggagacggccagaccgggcaatccatcgtcctggccaactccgcgccctactcggat
ttcaacgggccacgggaacgctcctggcaattgcgttacgaccagcgcctggcctggctt
gggctgccggacctgaacctggggctgcgttatcagcggggctggggagtggatggcagt
catgccccggccaacagcatctaccgtggcctgtatggcgaagatggccgtcatcacgaa
accgacctggatttgagctacaccttcagcagcggttcgctgaagggcctgcacctgcgg
gccacgcagatctggcaccgaggcaacagcgcccaggccgatggttccatcgaccagttg
cggattcgcgtgcagtatccgctggcgctgttctga
DBGET
integrated database retrieval system
