Pseudomonas protegens Cab57: PPC_5541
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Entry
PPC_5541 CDS
T03613
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PPC_5541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_5541
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_5541
Enzymes [BR:
ppro01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PPC_5541
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PPC_5541
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PPC_5541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAO64888
LinkDB
All DBs
Position
complement(6122882..6127081)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRISETVNDRDGGSVSATRIVDTTVGRALLFQVVPKGLSFDVVNLPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRNGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDVKDRPAAGKDIRPAVKM
VGMDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVAKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagttgcgctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcttcgccggttgcccacatctggttcctgaaatcgctg
ccgtcccgtatcggcttgctgatggacatgactctgcgtgatatcgagcgcgttctctac
ttcgagagctacgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctg
aacgatgagcagtacttcgaagcgctggaagagttcggcgatgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagattggccgt
ctgcgtgaagagattccgcaaaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaacctgccagagtggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgtttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgtttgaag
cgcctgctggatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgcactgctcgacaacggtcgtcgtggccgcgctatcaccggttccaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagttgttcaagccgttc
atcttcggcaagttggaaatgcgtggcctggccaccaccatcaaagctgccaagaagatg
gtcgagcgcgaactgccagaggtttgggacgttctcgctgaagtgatccgtgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtctgggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtgccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgacccgtgaagcgatcaacgcc
aagggcgaaggtcgtgtgttcgcggacctgcaggaagtcgaccgcgtattccgcgccggc
gaagcggctctgcacgccaagatcaaggttcgcatcagcgaaaccgtcaatgatcgtgat
ggcggcagcgtgagcgccacccgtatcgtcgacaccactgtcggccgtgctctgctgttc
caggttgtgccgaagggtctgtcgttcgacgtcgtcaacctgccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagctcgcatcatcggtgctgccaccgacgaa
gtgaaagaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtcgaaggccaacgacgaagtatccaaggcaatgatggccaac
ctctcgaaagagaaggtcatcgaccgcaatggcgacgaagtcgagcaagagtcgttcaac
tcgatgtacatgatggctgactcgggtgcgcggggttccgcagcacagatccgtcagttg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgattact
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aaaggtctggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtggacgttgcgcaggatctggttgtaaccgagatcgattgcggcaccgaacacggcctg
ctgatgactccgcacattgaaggcggcgacgttgtagagccactgggtgagcgcgtattg
ggtcgtgttatcgcccgcgacgtattcaagccgggtaccgaggacgtcatcgttcctgcc
ggcaccctggtagacgaaaagtgggtcgaattcatcgagctcaacagcatcgacgaagtg
atcgtgcgttcgccgatcagttgcgaaacccgctatggcatctgcgccaagtgctacggc
cgtgacctggctcgtggtcaccaggtgaacattggtgaggcggtcggcgttatcgctgcc
caatccatcggtgagccgggtacccagttgaccatgcgtacgttccacattggtggtgcg
gcaagccgtacttccgcagccgacagcgttcaggtgaagaatggcggtaccgtccgtctg
cacaacctgaagcacgttgagcgtgtggatggccacctggttgctgtgtcccgttccggt
gagctggcaatcgctgatgacttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgctatcgtggccaagtgg
gatccgcacactcacccgatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtgcttgacgtcaaagaccgtccagctgccggcaaggacatccgtcctgctgtgaagatg
gtgggtatggatggcaaggatctgctgctgccaggtaccgacgtaccggcacagtacttc
ctgccggctaacgccctggtcggtgttgccgacggtgcgcagattgcgatcggtgatgtt
atcgctcgtattccgcaagaaacttcgaagacccgtgacatcaccggtggtctgccgcgt
gttgccgacctgttcgaagctcgtcgtccgaaggaagcgtcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaagggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggttgaaatcgccgagtccggcgactccagcttcatcaagggcgaccagatg
gaactgactcacgtactggtagaaaacgagcgtctgagcaccgaagacaagttcgtcgcc
aagttcacccgcgtactgctgggtatcaccaaggcgtccttgtccaccgaatcgttcatc
tcggcggcctctttccaagagaccacccgtgtactgaccgaagcggcggtaactggcaag
cgcgactatctgcgtggcctgaaagaaaacgtggtcgtgggtcgcctgatcccggccggt
actggcctggcgtaccacagcgagcgtaagcgtcgtcgtgatgcagacaagccgctgcgc
gtaagcgcaagcgaagtcgaagcagcactgactgaagcgctgaactccagcggtaattga
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integrated database retrieval system
