KEGG   Pseudomonas protegens Cab57: PPC_5647
Entry
PPC_5647          CDS       T03613                                 
Name
(GenBank) exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
ppro  Pseudomonas protegens Cab57
Pathway
ppro03030  DNA replication
ppro03430  Mismatch repair
ppro03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ppro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PPC_5647
   03430 Mismatch repair
    PPC_5647
   03440 Homologous recombination
    PPC_5647
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppro03032]
    PPC_5647
   03400 DNA repair and recombination proteins [BR:ppro03400]
    PPC_5647
Enzymes [BR:ppro01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PPC_5647
DNA replication proteins [BR:ppro03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     PPC_5647
DNA repair and recombination proteins [BR:ppro03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     PPC_5647
SSDB
Motif
Pfam: RNase_T Rv2179c-like RNase_H_2 DEDDh_C
Other DBs
NCBI-ProteinID: BAO64994
LinkDB
Position
6256810..6257517
AA seq 235 aa
MSLFAWFRPAVSLLSAEQQQRRDRLPAFTELNESSLREQRWVVVDVETTGLNLNRDQVLS
IGAVVIEDGAIDFSQQFERTLQREGHKLSPSVLIHGLGPSAIAAGCDPVEALLDFMEFVG
DSPLLAFHAPFDQHMLGRALKDSLGYRLQHSFLDVADMAPLLCPQAQIRQAGLDDWVRWF
NLQVVERHNAAADALATAELALILFNRARQQQIHSPLNLQQRLGQWKRRQQAPSF
NT seq 708 nt   +upstreamnt  +downstreamnt
atgagcctgtttgcctggttccgccccgcagtcagcctgctgagcgccgagcagcaacag
cgtcgcgatcggctaccggccttcaccgagctgaatgaaagcagcctgcgagagcagcgc
tgggtagtggtggacgtggaaaccaccggcctcaacctcaaccgcgaccaggtgctgtcc
attggcgcggtggtgatcgaagacggtgccatcgacttcagccagcagttcgagcgcacc
ctgcaacgcgagggccacaagctcagccccagcgtactgattcacggcctggggcccagc
gccatcgctgccggctgtgatccggtggaggccctgctggatttcatggagttcgtcggc
gacagcccgctgctggcctttcatgccccgttcgaccagcacatgctcggccgggcgctg
aaggacagcctgggctaccgcctgcaacacagcttcctcgatgtggcggacatggcgccg
ctgctgtgtccccaggcccagatccgccaagccgggctggacgactgggtgcgctggttc
aacctgcaagtggtggagcggcataacgcggcggccgatgccctggccaccgcggagctg
gcgctgatcctgttcaaccgcgcccgccagcagcagatccacagcccgctgaacctgcaa
cagcgcctgggccagtggaaacgccggcagcaggcaccttcgttctga

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