Pseudomonas protegens Cab57: PPC_5817
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Entry
PPC_5817 CDS
T03613
Symbol
mutM
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PPC_5817 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_5817 (mutM)
Enzymes [BR:
ppro01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
PPC_5817 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
PPC_5817 (mutM)
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PPC_5817 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
BAO65164
LinkDB
All DBs
Position
complement(6430231..6431043)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHLEGQKVSRVIVRDRRLRWPIPEDLDVRLSGQRIVLVERRAKYL
LINAEVGTLISHLGMSGNLRLVEVGLPAAKHEHVDIELESGLALRYTDPRRFGAMLWSHD
PLNHELLVRLGPEPLTDLFDGERLYQLSRGRSMAVKPFIMDNAVVVGVGNIYATEALFAA
GIDPRREAKGISRARYLKLAIEIKRILAAAIERGGTTLRDFIGGDGQPGYFQQELFVYGR
GGENCKVCGTGLREIKLGQRASVYCPRCQS
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccggaagtcgaaaccacccggcgcggaatcgcgccgcatctggaaggc
cagaaagtcagccgggtcatcgtccgtgaccggcgcttgcgctggccgatccccgaagat
ctggacgtgcgcctgtccgggcagcgcattgtgctggtggagcggcgggccaaatacctt
ttgatcaatgccgaggtcggcaccctgatcagccacctgggcatgtccggcaacctgcgt
ctggtggaggtcgggctgccggcggccaagcacgaacatgtggatatcgagctggagtcc
ggcctggccctgcgctacaccgatccgcggcgctttggcgccatgctctggagccacgac
ccgctgaatcacgaattgctggtgcgcctggggcccgagccgctgaccgacctgttcgac
ggcgagcgcctgtatcagctgtcccgcggacgttccatggcggtcaagccgttcatcatg
gacaacgcggtggtggtgggggtgggcaatatctatgcgaccgaggcgctgttcgccgcg
ggcatcgacccgcgccgcgaagccaaggggatttcccgggcgcgctacctgaagctggcg
atcgagatcaaacgcatcctggcggccgccatcgagcgcggcggcaccaccttgcgcgac
tttatcggtggcgatggccagccgggctacttccagcaggaactgttcgtctacgggcgt
ggcggggagaactgcaaggtctgcggcaccgggctgcgggaaatcaagctgggccagcgg
gccagtgtctattgcccgcgttgccagagctga
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