Pseudomonas protegens Cab57: PPC_5931
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Entry
PPC_5931 CDS
T03613
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PPC_5931 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ppro03021
]
PPC_5931 (rho)
03019 Messenger RNA biogenesis [BR:
ppro03019
]
PPC_5931 (rho)
Transcription machinery [BR:
ppro03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PPC_5931 (rho)
Messenger RNA biogenesis [BR:
ppro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PPC_5931 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
Fungal_virus_P2_C
NACHT
AAA
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
BAO65278
LinkDB
All DBs
Position
complement(6552648..6553907)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIASNITRNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRKIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEVAAIEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aagcacgcgaaaagcggtgaggaaatctccggtgatggcgtgctggagatcctccaggac
ggcttcggcttccttcgctctgctgacgcctcctatctcgctggcccggacgatatctac
gtctcgccaagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctcccaaggaaggcgagcgttacttcgcgctgctcaaggtcgataccatcaac
tacgaccgcccagagaacgccaagaacaagattctgttcgaaaacctgacgccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccactgaagacctgaccggtcgt
gtgatcgatctgtgcgccccgatcggtaaaggccagcgtggtctgatcgttgctccgcca
aaggcgggcaagaccatcatgctgcagaacatcgcgtcgaacatcacgcgcaacaaccct
gaagttcatctgatcgtgctgctgatcgacgagcgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggtcgcctccaccttcgacgagccgccaacccgccacgtg
caagtggccgagatggtgatcgagaaggccaagcgcctggtcgaacacaagaaggacgtg
gtgatcctgctggactccatcacccgtctggcccgtgcctacaacaccgtgatcccgagc
tccggcaaggtcctgaccggtggtgtcgatgcccacgccctggagaaaccgaagcgtttc
ttcggcgccgcgcggaacatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaagatggatgaagtgatctacgaagagttcaagggtaccggcaac
atggaactgcccctggaccgcaagatcgctgaaaagcgcgtcttcccggccatcaacatc
aaccgttccggcacccgccgcgaagagttgctgaccgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcatcccatggatgaagtcgctgccatcgaattcctggtc
gacaagttgaaacagaccaagaccaacgatgagttcttcctgtcgatgaaacgcaagtaa
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