Pseudomonas protegens Cab57: PPC_6041
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Entry
PPC_6041 CDS
T03613
Symbol
tssC-2
Name
(GenBank) type VI secretion system
KO
K11900
type VI secretion system protein ImpC
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PPC_6041 (tssC-2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ppro02044
]
PPC_6041 (tssC-2)
Secretion system [BR:
ppro02044
]
Type VI secretion system
Imp/Vas secretion system core components
PPC_6041 (tssC-2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
BMFP
MSP1b
Motif
Other DBs
NCBI-ProteinID:
BAO65388
LinkDB
All DBs
Position
6668156..6669649
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AA seq
497 aa
AA seq
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MTELMRDNQAQPGATEQASEFASLLLQEFKPKTERAREAVETAVRTLAEQALAQTDLVSN
DAIKSIESIIAAIDAKLTAQVNQVIHHPEFQKLESAWRGLHYLVNNTETDEQLKIRVLNI
SKPELHKTLKKFKGTAWDQSPLFKKMYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGE
LSKVCAAMHSPFIAAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIG
LTMPRFLARLPYGAKTDPVEAFAFEENTDGADSSKYTWANAAYAMAVNINRSFKHFGWCS
RIRGVESGGEVENLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDF
AAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKEKDEM
QRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFFLRPHYQLEG
LTVSLRLVSKLPSAKGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaattgatgcgtgacaatcaggcgcaacccggcgccaccgagcaggccagcgaa
ttcgcatcgctgctgctgcaggaattcaagcccaagaccgagcgtgctcgcgaagccgtg
gaaaccgcggtgcggaccctggccgaacaggccctggcgcagaccgacctggtgtccaac
gacgccatcaagtcgatcgagtcgatcatcgccgccatcgacgccaagctcaccgcccag
gtcaaccaggtgatccatcacccggaattccagaagctggaaagcgcctggcgcggcctg
cactacctggtgaacaacaccgagaccgacgagcagctcaagatccgcgtgctcaacatc
tccaagccggagctgcacaagaccctgaagaaattcaagggcacggcctgggaccagagc
ccgctcttcaagaagatgtacgaagaggaatacggccagttcggcggcgagccttacggc
tgcctggtgggcgactactacttcgaccagtcgccaccggatgtcgagctgctgggcgag
ctgtccaaggtttgcgccgccatgcactcgccgttcatcgccgcggcttcgccgaccgtg
atgggcatgggctcgtggcaggaactgtcgaacccgcgcgacctgaccaagatcttcacc
accccggaatacgccggctggcgctcgttgcgtgaatcggaagactcgcgctacatcggc
ctgaccatgccgcgcttcctggcgcgcctgccatacggcgccaagaccgacccggtggaa
gccttcgccttcgaggaaaacaccgacggcgccgacagctccaagtacacctgggccaac
gccgcctacgccatggccgtgaacatcaaccgttcgttcaagcatttcggctggtgctcg
cggattcgcggcgtggagtccggcggcgaggtggaaaacctcccggcccacaccttcccc
accgacgacggtggcgtggacatgaagtgcccgaccgagatcgccatctccgaccgtcgt
gaagcggaactggcgaagaacggcttcatgccactgctgcacaagaagaacaccgacttc
gccgccttcatcggcgcccagtcgctgcagaagccggccgaatacgacgacccggacgcc
accgccaacgccaacctggccgcgcgcctgccgtacctgttcgccacttgccgcttcgct
cactacttgaagtgcatcgtgcgcgacaagatcggctccttcaaagagaaggacgagatg
cagcgctggttgcaggactggatcctcaactacgtcgacggtgatccggcgcactccacc
gaaaccaccaaggcccagcacccactggccgcggcagaagtggtggtcgaggaagtcgaa
ggcaaccccggctactacaactcgaagttcttcctgcgcccgcactaccagctcgaaggg
ctgaccgtgtcgttgcgcctggtatccaaactgccgtccgccaagggcgcctaa
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