Pseudomonas protegens Cab57: PPC_6049
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Entry
PPC_6049 CDS
T03613
Name
(GenBank) Rhs family protein
Organism
ppro
Pseudomonas protegens Cab57
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
PAAR_motif
TEN_YD-shell
Beta-prop_WDR19_1st
DUF6314
Motif
Other DBs
NCBI-ProteinID:
BAO65396
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All DBs
Position
6678994..6683454
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AA seq
1486 aa
AA seq
DB search
MSDALWAARLGDGLEHTSMMADILGGVLEVAANVAIGALATMAVAAAAGITVATGGLGAC
VLGLVVGVVVGVVMSKTGADKGLSNLCEGIANALFPPSIQATIASGSKKVLTNNKPAARA
AGIAPPTQISGDGAEEGEATDTPSATPEEGPGFLDMAKEFFSQMWRPTVASPAPGSQTKE
LDLVTCTKHPPMPVQYLAEGSEKVSIDGQPAVRSGDRSTCDAKVVSAGPISPNVTIGGGS
VVVREIRSGKTPGVGLAVTVLMMLKGGKGKFLSNLPCMLMAGVNSFVVSQATNALTQAVV
ASTHPVHAATGAKVLGADDDLDFTLPGLMPIEWQRFYNSRDERRDGLLGAGWSLPYEISV
QIEPHPEGGERLLYIDEQGRRIDMGSIALGAGAFSPGEGLSVRRNENGQLLIESSDGIYR
LFEPLPGDSSRLRLSQLGDRNDNRLHLEYDSSGRLWLLRDTFEQAQLELSYSTLWPGRIA
QVERLYPDQQREVLVSYDYDAAGDLAQVRDSEGQVQRRFAYDAGHRMIEHQLATGLRCFY
QWTQFADQQWRVTRHWTDEGDSYQYDYDLEAGITQVTDSLQRLSRRRWNSQLQIVEYTDN
LNQTWAFEWNDERQLLSATDPLGGRYAYSYDETGNLIAETDPLGHSHSTLWLEHWSLPQT
LTDPAGESWHLRYDPRGNCIAEVDPLGQVTQYRHDAHGQVVEIIDAAGRSRKMRWNSSGQ
LLEHLDCSGYPTRFEYDRRGNVKAIIDAHGEHTRFHYDCQGRLLSSQLADGRAEHFQRSS
NGQLQGYTDPSGYTTLYQYNRRGQIRQRIDAHGRQVRFDYDAYGRLLALTNENGESYRFA
WDAGNRLSEQQDLDGSAKRYGYDLLNNVVELQSHPAPYGTGLSAVPVQPIAPIIHRFERD
AVGRLLAKITDDGRSQYTYDPLNQLTAASFTDNLGNQQALSFSYDALGQLLEEHTVAGSL
IHRYDELGNLTQTQLPDKRWLNRLYYGSGHLHQINLDGQVVSDFQRDRLHREVLRTQGQI
STRSEYDRCGRLRARLQHSSLLANTLPTAPERHLEYDDSDNLVGLAERHATGQHRQLFHY
DATGRIIASQDGLQGQKETFAYDAAANLLDGPKAGAGLVVHNKLLTYQDKRYRYDAFGRM
IEKRSGRRGVQRFAYDAEHRLIEVRNQTSSGETLVRMRYDVLGRRISKSEYDSQGNLLGE
TRFVWDGLRLLQEQRHQQTSLYVYEDLGHAPLARVDGLGAQQKIRYYHNDLNGLPQQLCE
PDGHSVWQARYQVWGNTVEEIREPYYIEEQNLRFQGQYLDRETGLHFNTFRFYDPDIGRF
TTPDPIGLAGGLNLYQYAPNPIGWIDPLGWICKSAYSGRRGTTKAKADLERNGFTVVGEE
LTMKVKHPVTQKSYRIRADIIAKDKAGNYHVFEVKNGSGKLTKNQQGSGMFDMSNPANTN
GGLGGGLIKPSGATQGQFEVATKTARGTQFGGNGAQHSATFWLLRY
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcactgtgggccgcccgcctgggcgatgggctggaacacacctcgatgatg
gccgacattctcggcggcgtgctggaggtggcggccaacgttgccatcggcgccctggcg
accatggcagtagccgcggcggcaggcatcaccgtggccaccggcggcctcggcgcctgt
gtgctggggctggtggtgggcgtcgtcgtcggcgtggtcatgagcaagaccggagccgac
aagggcctgagcaatttatgcgagggcatcgccaacgccctgttcccgccctcgatacag
gccaccatcgccagcggctcgaaaaaggtcctgaccaacaacaagccggcggcccgcgcg
gccggcatcgcaccgccgacacagatcagcggcgacggcgccgaagaaggcgaagccacc
gacaccccgtcggcaacgcccgaggaagggcccggtttcctcgacatggccaaggagttt
ttctcgcagatgtggcggcccaccgtggcctccccggcgccaggctcccagaccaaggaa
ctggacctggtgacctgcaccaagcacccgccgatgccggtgcagtatctggctgaaggc
tcggaaaaggtcagcatcgacggccagccggcagtacgcagcggcgaccgcagcacctgc
gatgccaaggtagtgtcggccgggcctatctccccgaacgtgaccatcggcggtggctcg
gtggtggtgcgcgagatccgtagcggcaagaccccgggggtgggcctggcggtgaccgtg
ctgatgatgctcaagggcggcaagggcaagttcctcagcaacctgccgtgcatgctgatg
gcgggggtcaattcctttgtcgtcagccaggccaccaatgctttgacccaggccgtcgtc
gcctcgacccacccggtgcatgcggcaaccggggccaaggtgctcggagccgacgacgat
ctggatttcaccctgcccgggctgatgcccatcgaatggcaacgcttctacaacagccgc
gacgaacgtcgtgacggcctgctcggggccggctggagcttgccttacgagatcagcgtc
cagatcgagccccaccccgaaggtggcgagcgcctgctctacattgatgagcaaggacgc
cgcatcgacatgggctccattgccctgggtgcaggagccttcagccccggtgaaggcttg
agcgtacgacgcaacgagaacggacagttgctgatcgaaagcagcgacggtatctaccgt
ctgttcgagccgctgccgggcgactcctcgcggctgcgcctgagccagctgggggaccgc
aacgacaaccgtctgcacctggagtacgactcgtccggacgcctctggctgctgcgtgac
acctttgaacaggcgcagctcgaactgagctacagcacgctctggcccggtcggattgcc
caggtcgaacggctgtaccccgaccagcaacgggaagtgctggtcagctatgactacgat
gcggcaggggacctggcacaggtgcgcgatagcgaaggccaggtacagcgtcgcttcgct
tatgacgccggccaccggatgatcgaacatcaattggccaccgggctgcgctgcttctat
caatggacacaatttgccgaccagcaatggcgagtgacccgtcactggaccgacgaaggc
gatagctatcagtacgactatgatctggaggcgggaatcacccaggtcaccgacagcctg
caacgcctcagccgccgccgctggaacagccagttgcagatcgtcgagtacaccgacaac
ctcaaccagacatgggccttcgagtggaacgatgagcgccaactgctcagcgccaccgac
cccttgggagggcgctatgcctatagctacgacgaaaccggcaacctgatagccgagacc
gatcctctggggcacagccattcgaccttgtggctggagcactggtcgctgccacagacc
ctgaccgatcccgccggagaaagctggcacctgcgctacgatccccggggcaactgtatc
gccgaagtagacccgctgggccaggtgacccagtaccgccatgacgcgcacggccaggtg
gtggagatcatcgatgccgcgggaagaagccggaagatgcgctggaactcgtccgggcaa
ctgcttgaacacctggactgctcgggctatccaacccgcttcgaatacgatcgacgcggc
aacgtgaaagccatcatcgatgcccatggcgagcacacccggttccattacgactgccag
ggacggttgctgagcagtcaactggccgatgggcgcgccgagcattttcaacgcagcagc
aacggtcagctacagggctacaccgacccttccggctacaccacgctctaccagtacaac
cggcgcgggcagatacgccagcgcatcgacgctcacggccgacaggtccggttcgactat
gacgcgtacggacggctgctggcgctcaccaacgagaacggcgaaagctatcgctttgcc
tgggacgccggcaaccgcttgagcgaacagcaggacctcgacggcagtgccaaacgctat
ggctatgacctgctgaacaacgtcgtcgaactccagtcccaccccgccccttatggcacc
gggctgagcgccgtgcccgtgcaacctatcgcgccgatcatccaccggttcgagcgcgat
gccgtgggacggctgctggccaaaatcacagacgatggccgcagccaatacacctacgac
cccttgaaccaactgaccgccgccagctttaccgacaacctcggcaaccagcaggcactg
agtttcagctacgacgccctgggccaattactcgaagaacacaccgtggccggcagcctg
atccatcgatacgacgaactgggcaatttgactcagacccagctaccggacaagcgttgg
ctcaaccggctctattacggcagcggccatctgcaccagatcaatctcgatggccaggta
gtcagcgactttcaacgtgaccgcctgcaccgtgaggtgctgcgtacccagggtcagatc
agcactcgcagcgaatacgaccgttgtggccgcctgcgcgcacgcctgcagcattccagc
ctgctggcaaacaccttgccaacagccccggagcgacacctggagtacgacgatagcgat
aatctggtgggcctggccgagcgacatgccaccgggcaacatcggcaactgttccattac
gacgcgaccgggcgaatcattgccagccaggacggcctgcagggccagaaagaaaccttc
gcctacgacgccgccgccaatttgcttgatggcccgaaggcgggcgccgggctggtggtg
cacaacaaattgctgacctaccaggacaagcgctaccgctacgatgcctttgggcgaatg
attgaaaaacgcagtggtcggcgaggcgtgcaacgttttgcctacgacgccgaacaccgg
ttgatcgaagtgcgcaatcagacctccagcggcgaaaccctggtcaggatgcgctacgac
gtcttgggtcgccgcatcagcaagagcgagtacgacagccagggcaaccttctgggtgaa
acgcgattcgtctgggatggcctgcggctgctgcaggaacagcgtcatcaacagaccagc
ctctatgtctatgaagacctgggacatgcgcccctggcgcgggtcgacggcctcggcgcg
cagcagaagatccgctactaccacaacgacctgaatggcctgcctcaacagctttgcgag
cctgacggccatagcgtctggcaggcccgctatcaggtctggggcaacactgtcgaagaa
atacgcgagccctactacatcgaggaacagaatctcaggttccagggccagtacctggac
cgcgagactggattgcacttcaacacgttccgtttctacgacccggatatcgggcgcttc
accacgccggaccccatcggcctggccggaggcttgaacctttatcagtacgctcccaac
ccaatcggttggatcgatccgctgggctggatctgcaaatcggcctacagcggcagaagg
ggcactacaaaagccaaagctgacctcgagaggaacggtttcactgtggtaggtgaagaa
ttgaccatgaaggtcaaacaccctgtcacccagaagtcctatcgcatcagggcagatatc
atcgccaaggacaaagccggtaactaccacgtgttcgaagtcaaaaatggcagcggcaaa
ctgaccaagaaccaacagggatcgggaatgttcgacatgagcaatccggccaataccaac
ggtggtctgggcggtggcctgatcaaaccgtcgggcgctacccagggccagttcgaagtc
gcgaccaaaaccgccagaggtacccagttcggtggcaatggcgcacagcattcggccacc
ttctggcttcttcgctattga
DBGET
integrated database retrieval system
