Pseudomonas protegens Cab57: PPC_6116
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Entry
PPC_6116 CDS
T03613
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ppro
Pseudomonas protegens Cab57
Pathway
ppro03420
Nucleotide excision repair
ppro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ppro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PPC_6116 (uvrD)
03430 Mismatch repair
PPC_6116 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ppro03400
]
PPC_6116 (uvrD)
Enzymes [BR:
ppro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PPC_6116 (uvrD)
DNA repair and recombination proteins [BR:
ppro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PPC_6116 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
PPC_6116 (uvrD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
AAA_11
Viral_helicase1
RHH_1
Motif
Other DBs
NCBI-ProteinID:
BAO65463
LinkDB
All DBs
Position
6752309..6754492
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRHRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDMFLATMRGIYEAYE
AACQRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAQ
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSADFPDTEVIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGDGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSDVSMWEAMRQLVANKGLTGRAAGALGAFIELIENLAAKTLEMPLH
LMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFENTEEDEDLTPLAAFLGHA
SLEAGDTQADEHEDSVQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
SQSTSSLFGGSEIPDTGLSLGQAVRHSVFGDGVILNFEGAGAQARVQVNFSEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctccctcctgttgaactccctcaacgacgcccaacgccaggccgta
gctgcctccgtgggtcgtcagttggtcctggccggtgctggctccggcaaaacccgtgtg
ctggtgcaccgtatcgcctggttgatccaggtcgagaacgcctcaccccactcgatcctg
tcggtgaccttcaccaacaaggccgcagccgagatgcgccatcgcatcgaacaactgctg
ggcatcaacccggcaggcatgtgggtcggcaccttccacggcctggcccaccgcctgctg
cgggcccactggcaggaagcggggctgagccagaccttccagatcctcgacagcgacgac
cagcaacgcctggtcaagcgggtaatccgcgagctgggcctggacgaacagcgctggccg
gcccgccaggcccagtggttcatcaacgggcagaaggacgaaggcctgcgcccgcaacat
atccaggccagcggcgacatgttcctggccaccatgcgcggcatctatgaggcctacgag
gccgcctgccagcgcgccggggtcatcgacttctccgaactgctgctgcgcgccctggac
ctgtggcgcgaccacccgggtttgctggcgcactaccagaagcgtttccgccacgtgctg
gtggacgaattccaggacaccaacgccgtgcaatacgcctggctgcggttgctggcccag
ggtggcgacagcctgatggtggtgggcgacgacgaccagtcgatctacggctggcgcggg
gcgaaaatcgagaacatccaccagtactccgccgacttcccggacaccgaagtgatccgc
ctggagcagaactaccgctctactgccggcatcctcaaggctgccaacgccctgatcgcc
aacaacaccgggcgcctgggcaaggagctgtggaccgacggcggcgacggtgaagccatc
aacctgtatgccgccttcaacgagcacgatgaagcccgctatgtagtggaaaccatcgag
agcgcgctgaagaccggcctggcccgcagcgacatcgccattctctaccgctccaacgcc
cagtcccgggtgctggaagaagccttgctgcgcgaacgcattccgtaccgcatctatggc
ggccagcgcttcttcgagcgggcggaaatcaagaacgccatggcttacctgcgcctcctg
gaaggccgtggcaacgacgcagccctggaacgggtgatcaacgtgccagcccggggcatc
ggcgagaagaccgtcgaagccatccgcgagcatgcgcgccacagcgatgtatcgatgtgg
gaagccatgcgccagctggtggccaataaaggcctgaccgggcgcgctgcaggtgcgctg
ggggcctttatcgaactgatcgaaaacctcgccgccaagaccctggaaatgcccctgcac
ctgatgacccagaccgtcatcgagcagtcggggctgattgcctaccacgaagcggaaaaa
ggcgaaaaaggccaggcccgggtggaaaacctcgaggaactggtgagcgccgcgcgcaac
ttcgagaacaccgaagaggacgaagacctgacgcccctggcggcattcctcggccacgct
tccctggaagccggcgatacccaggccgacgagcatgaagacagcgtgcaactgatgacc
ctgcacagcgccaagggtctggagttcccctacgtgttcctggtgggcatggaagaaggc
ctgttcccccacaagatgagcctggaagaacccggccgccttgaggaagaacgccggctg
gcgtatgtgggcattacccgggccatgcaaaacctggtgatgacctacgcggaaacccga
cgcctgtacggcagcgaaacctacaacaaggtgtcgcgtttcgtgcgcgaggtgcccaag
gggctgattcaggaagtgcggctgtccaatagcgtcagccggcctttcggcggcggccag
tcacaaagtaccagcagcctgttcggcggcagcgaaatcccggacaccggcctgagcctc
ggccaggcggtacggcactcggtgttcggcgatggggtgatcctcaatttcgagggcgcc
ggcgcccaggcccgggtccaggtcaacttcagcgaaggcagcaagtggctgatgctcggc
tatgccaagctggaagccatctaa
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