Paenibacillus protaetiae: ET464_13810
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Entry
ET464_13810 CDS
T06829
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pprt
Paenibacillus protaetiae
Pathway
pprt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ET464_13810 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pprt03019
]
ET464_13810 (rnr)
03016 Transfer RNA biogenesis [BR:
pprt03016
]
ET464_13810 (rnr)
Enzymes [BR:
pprt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ET464_13810 (rnr)
Messenger RNA biogenesis [BR:
pprt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ET464_13810 (rnr)
Transfer RNA biogenesis [BR:
pprt03016
]
Prokaryotic type
tRNA degradation factors
ET464_13810 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1_RRP5
CSD
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QAY67315
UniProt:
A0A4P6EXD4
LinkDB
All DBs
Position
complement(2999258..3002272)
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AA seq
1004 aa
AA seq
DB search
MISGQDLLDFMRETAYKPMTYNELEQHFGIDDPDDFKSFLKLLNELEEAGQILRTRNDRY
GVPERMNLLRGRLQAHAKGFAFLIPDEKDHPDVYIHANDLKSAMNGDIVLVRIISKSESG
GRMEGEVARIVQRAVTQVVGTFQNHEAYGFVIPDDKRINRDIFIPKGGFQGAVTGQKVVV
RIVSYPEGRSAAEGEIIETLGHKDDPGVDILSIIRKHMLPEGFPDDVMAEAESAPDSITE
EEIVQQGRRDLRGETIVTIDGEDAKDLDDAVHVKRLDNGNYLLGVHIADVGYYVREKSAL
DQEAYRRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFDPKTLKRVRHDIF
TSVIKTTERMTYTNVRRLLTATEEEPETELKERYAGLLDMFTLMEELAMKLRRKRMKRGA
IDFDFQESKVIVDENGKAVDIVKRERSVAEQIIEEFMLAANETVAEHFHWLRVPFLYRIH
EDPDSEKLLTFMQFATNFGYVVKGKGNSVHPRALQTLLEEIQGTKEETVISTMMLRSMKQ
AKYDAESLGHFGLAAEFYTHFTSPIRRYPDLVIHRVMREVIENGGALTDARQEALAARMP
EIAQQSSERERVAVDAERDTERLKKCEYMLDKVGEEFDGIISSVTSFGMFVELDNTVEGL
IRLSELSDDYYHFHEVHMVLIGERTSKVYRIGDEVNIRVARVNMDDHTIDFEMVDMKSRS
SFRGVADAGYGGRKKRREGFRADRPGAAGAGRAGRGAGGRGSAAGGGAGRTGAAEGRGKG
GAGAGRSSASGRGAGFGGAAGPRSGGGFGRGGGAAAAGRTGGAAAGTGNPWLEPGETLEA
ANERSSRGKGGVRTDMWGLPIRRSGGSANRYDDGHEAGGSSERRDGRGGRGSGGPGRSSG
GREGGFPERGSSGRSEGRGDRGGRQQERSGSDGRSYGGGRKRRRDDTSASGIFVGDGGEG
RPSSSEPDSGNGGGGQNRAKQSGDSRKKGKKGGAMSAFVRKKRK
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgattagcgggcaggatctgcttgattttatgcgggaaaccgcttataaaccgatgaca
tataacgaactggagcagcatttcggcattgatgatccggacgatttcaaatcgtttctg
aaactgctgaacgagctggaggaagcgggacaaattttgcgtacgcgcaatgaccgctat
ggcgtgccggagcgcatgaacttgctgagagggcgcttgcaggcgcacgccaaaggattt
gcttttctaattccggacgaaaaggatcatccggatgtgtatatccatgccaatgatttg
aaaagcgcaatgaacggagacattgtgcttgtccggattatatccaaaagcgaaagcgga
ggccggatggagggcgaggttgcccgcatcgtgcagcgtgcggtaacgcaggtcgtcggc
acgtttcagaatcatgaggcatacggctttgtcattccggacgataaacggattaaccgg
gatatttttattccgaaaggcggtttccaaggggcggtaaccgggcaaaaggtcgtagtc
cgcattgtatcttacccggaaggccgttcggcggcggaaggcgagattattgaaacgctt
ggccataaagatgatcccggcgtcgatattttgtcgattatccgcaagcatatgctgccg
gaaggattcccggacgatgtgatggcagaagcggaatccgctcccgattccattacggaa
gaggagatcgtgcagcaggggcggcgggatttgcgcggagaaacgattgtaaccattgac
ggcgaagatgccaaggatctggatgatgccgtacatgtgaagcggctcgacaacggcaac
tatctgctgggcgtccatattgcggatgtcggctattatgtgcgggagaaatcggcgctg
gaccaggaggcttaccgccgcggctgcagcgtctacttggtggaccgcgttattccgatg
ctgccgcaccggctgtcgaacggcatctgctcgctgaatccgcaggtggaccggctgacg
atgtcctgcgaaatggagtttgatcccaagacgctgaaacgcgtacggcatgatattttt
acaagcgtcattaagacaacggagcggatgacctatacgaacgtccgccgcttgctgacg
gctacggaagaagagccggagacggaactgaaagaacgttacgccgggctgcttgatatg
tttacgcttatggaagagctggcgatgaagctgcgccggaaacggatgaaacgcggagca
attgattttgactttcaggaatcgaaagttattgtcgacgagaatggcaaagccgtcgac
attgtgaaacgcgagcgttcggtcgccgagcaaattatcgaggaatttatgctggcggcc
aatgagacggttgcggagcattttcactggctgcgcgtgccgttcttgtaccggatccat
gaagatccggattccgagaagctgctgacgtttatgcagttcgcgacgaacttcgggtat
gtggtcaaaggcaaaggcaactccgtccatccccgcgcgctgcagacgctgctggaggaa
attcaggggacaaaagaagagacggttatttcaacgatgatgctccgttccatgaagcag
gccaaatacgatgccgaaagcttggggcattttggcctcgctgcggagttctatacgcat
ttcacatcgccgatccgccgttacccggaccttgttattcaccgcgtcatgcgggaagtc
atcgagaacggcggcgcgctgaccgatgcgcgccaggaggcgctggcggcgcgtatgccg
gagattgcgcagcaatcgtccgaacgcgagcgtgtggcggtggacgcggagcgggatacg
gaacggctcaaaaaatgcgaatatatgctggacaaagtcggcgaggaattcgacggcatc
attagcagcgtaaccagcttcggcatgtttgtggagctggacaatacggtggaagggctt
atccggctgagcgaactgagcgacgattactaccacttccacgaagtgcatatggtgctc
atcggcgagcgtacctccaaagtgtaccgcatcggcgacgaggtcaatatccgtgtggcg
cgtgtcaatatggacgaccatacgattgacttcgagatggtcgatatgaagtcgcgcagc
agcttccggggcgtggccgacgcgggctacggcggccgcaagaagcggcgcgaaggattc
cgcgccgatcgtcccggcgcagccggtgcaggccgcgccggacgcggcgccggcgggcgc
ggcagcgctgcaggcggcggtgcgggacgcactggcgcagccgagggacgcggcaagggc
ggcgctggcgctgggcgaagcagcgccagcgggcgcggagcaggctttggcggcgcagca
gggccgcgcagcggcggcggttttggccgcggcggcggagctgcggcagcgggccgcacg
ggcggcgcagcggcaggcacggggaacccgtggctggagccgggcgagacgctggaagcg
gcgaatgagcgcagcagccgcggcaagggcggcgtccgcacggatatgtgggggctgcca
atccgccgcagcggcgggtccgcaaaccggtacgacgacggccatgaagcaggcggttcg
tcagagcgccgtgatggccgcggcggccgcgggagcggcgggcctggacgctcgagcgga
ggccgtgaaggcggctttccggaacgcggatcgtcgggacgcagcgaaggccgtggagac
cggggaggccgccagcaggagcgttctggcagcgacggacgttcatacggcggcgggcgc
aaacggcggcgggatgatacgtctgccagcggtatttttgtaggggacggaggcgaagga
cgcccttcttcttcagagccggattccggcaatggaggcggcggacaaaaccgtgccaaa
caaagcggagacagccgtaaaaaaggtaaaaaaggcggcgcgatgagcgcatttgtacgt
aagaaaagaaagtag
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