Parelusimicrobium proximum: Dip518_001384
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Entry
Dip518_001384 CDS
T11048
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pprx Parelusimicrobium proximum
Pathway
pprx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pprx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dip518_001384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pprx03021
]
Dip518_001384
03019 Messenger RNA biogenesis [BR:
pprx03019
]
Dip518_001384
Transcription machinery [BR:
pprx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Dip518_001384
Messenger RNA biogenesis [BR:
pprx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Dip518_001384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
OB_RNB
AAA_22
AAA
nSTAND_NTPase5
Spore_III_AA
AAA_19
AAA_25
NACHT
DnaB_C
S1CSD-TOTE-2
NB-ARC
Mor
Motif
Other DBs
NCBI-ProteinID:
XTP69412
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All DBs
Position
1550243..1551748
Genome browser
AA seq
501 aa
AA seq
DB search
MPEKKEAKAAAAEEVKTSKEAKEAKETKEVKETKTDSKETKESNGREPKAAGSNGGSNGY
AKRGSFANAQQNMQNRTPNGAKTMDARALNKLSMAELTKLAVNYNIEEISGLKKQALIGK
IVAMQAKQNGSVYGGGVLEILPDGFGFLRSEDNSYLAGPEDIYVSPSQIKRFGLRKGDDI
EGLIRPPKDGERFFAMLQVQKVNGEESENIYNRSLFDNLTPLHPNERFTLEMDKNSITQR
VIDLLSPQGKGQRALIVAQPKTGKTTILKNIANSISENHKDVVLMVLLIDERPEEVTDMA
RSVKGEVIASTFDESADRHVQVAEMTVERAKRMVEQKKDVVILLDSITRLGRAYNTVAPS
SGRVLTGGLEATSLQRPKRLFGAARNMEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGN
SEIVLDRKLSERRIFPAIDPNKSSTRKEELLLTEDELNKVWIMRKVLSPLSSVDAMTLLI
EKLGACKSNKDFFKQMEVSSL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgccggaaaagaaagaagctaaagctgcggctgcggaagaagtgaaaacctctaaagaa
gccaaagaagctaaagaaacaaaagaagtaaaagaaaccaaaacggactctaaggaaacc
aaagagtctaatgggagagagcctaaagccgcaggatctaacggcggcagcaacggctac
gccaagcgcggcagctttgccaacgcgcagcagaatatgcaaaaccgcacccccaacggc
gccaaaacaatggacgccagagctcttaataagctcagcatggcagagcttaccaagctt
gccgttaactataatatcgaggagatatccggccttaaaaaacaggctcttatcggtaaa
atagtagccatgcaggctaagcagaacggctctgtttacggcggcggcgtgctcgagatt
ttgcccgacggtttcggcttcttacgctctgaggataacagctatttagcggggcctgag
gatatatatgtttctccttcgcagataaaacgcttcggcctgagaaagggcgatgacata
gaggggcttatccgcccgccgaaagacggagagcggttcttcgctatgctgcaggtgcag
aaggttaacggcgaagagtccgaaaatatttataacaggtctctttttgataacctgact
cctctgcatcctaacgagaggtttactcttgagatggacaaaaactctattacgcagaga
gtgattgacctgttgtctccgcagggtaaaggccagcgcgcgcttatcgtagcgcagcct
aaaacaggtaaaacaactatcttaaaaaacatcgccaactcaatcagcgaaaaccataaa
gacgttgtgcttatggtgctgcttatcgatgaaagacctgaagaggttaccgacatggca
agaagcgtaaagggcgaggtaatagcctctacttttgacgagtccgcagacagacacgtg
caggtagccgagatgaccgtggagagagccaagagaatggtagagcagaagaaagatgtt
gttatactgcttgactctattacaaggctcggcagagcgtacaacactgtggccccgtcc
agcgggcgtgtgctgacaggcggtcttgaggcgacgtcactgcagaggccgaagcgtctt
ttcggagctgcgagaaatatggaagagggcggctcgctcaccattatagccacagcgctt
gtggatacgggcagcagaatggacgacgtgattttcgaggagtttaaaggtacgggtaac
agcgagattgtgctcgacaggaagctgtccgagaggcgcattttccccgctattgaccct
aacaagtcaagcacgagaaaagaggagctcctccttaccgaagacgagcttaacaaggtc
tggattatgagaaaggtgctctcgccgctcagctctgtagacgcgatgactcttcttata
gaaaagctcggcgcgtgtaagtctaacaaagacttcttcaaacaaatggaagtaagctcg
ctgtag
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