Pan paniscus (bonobo): 100969006
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Entry
100969006 CDS
T02283
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
pps
Pan paniscus (bonobo)
Pathway
pps04512
ECM-receptor interaction
pps04514
Cell adhesion molecule (CAM) interaction
pps04820
Cytoskeleton in muscle cells
pps05144
Malaria
pps05205
Proteoglycans in cancer
pps05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100969006 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
100969006 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100969006 (SDC1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
100969006 (SDC1)
09174 Infectious disease: parasitic
05144 Malaria
100969006 (SDC1)
09166 Cardiovascular disease
05418 Fluid shear stress and atherosclerosis
100969006 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pps04131
]
100969006 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
pps04090
]
100969006 (SDC1)
00535 Proteoglycans [BR:
pps00535
]
100969006 (SDC1)
Membrane trafficking [BR:
pps04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
100969006 (SDC1)
CD molecules [BR:
pps04090
]
Proteins
100969006 (SDC1)
Proteoglycans [BR:
pps00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
100969006 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
Romo1
Glycophorin_A
Herpes_TAF50
Motif
Other DBs
NCBI-GeneID:
100969006
NCBI-ProteinID:
XP_034808548
Ensembl:
ENSPPAG00000037638
LinkDB
All DBs
Position
12:106303344..106327699
Genome browser
AA seq
310 aa
AA seq
DB search
MRRAALWLWLCALALSLQPALPQIVATNLPPEDQDGSGDDSDNFSGSGAGALQDITLSQQ
TPSTWKDTRLLTAIPTSPEPTGLEATAASTSTLPAGEGPKEGEAVVLLEVEPGLTAREQE
ATPRPRETTQLPTTHQASTTTATTAQEPATSHPHRDMQPGHHETSTPAGPSQADLHTPHT
EDGGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDHRNQSPVDQGAT
GASQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQ
KPTKQEEFYA
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgcgcggcgctctggctctggctgtgcgcgctggcgctgagcctgcagccggcc
ctgccgcaaattgtggctactaatttgccccctgaagatcaagatggctctggggatgac
tctgacaacttctccggctcaggtgcaggtgctttgcaagatatcaccttgtcacagcag
accccctccacttggaaggacacgcggctcctgacggctattcccacgtctccagaaccc
accggcctggaggctacagctgcctccacctccaccctgccggctggagaggggcccaag
gagggagaggctgtagtcctgctagaagtggagcctggcctcaccgcccgggagcaggag
gccaccccccgacccagggagaccacacagctcccgaccactcatcaggcctcaacgacc
acagccaccacggcccaggagcccgccacctcccacccccacagggacatgcagcctggc
caccatgagacctcaacccctgcaggacccagccaagctgaccttcacactccccacaca
gaggatggaggtccttctgccaccgagagggctgctgaggatggagcctccagtcagctc
ccagcagcagagggctctggggaacaggacttcacctttgaaacctcgggggagaacacg
gctgtagtggccgtggagcctgaccaccggaaccagtccccagtggatcagggggccaca
ggggcctcacagggcctcctggacaggaaagaggtgctgggaggggtcattgccggaggc
ctcgtggggctcatctttgctgtgtgcctggtgggtttcatgctgtaccgcatgaagaag
aaggacgaaggcagctactccttggaggagccgaaacaagccaacggcggggcctaccag
aagcccaccaaacaggaggaattctacgcctga
DBGET
integrated database retrieval system