Pan paniscus (bonobo): 100975490
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Entry
100975490 CDS
T02283
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X3
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
pps
Pan paniscus (bonobo)
Pathway
pps03008
Ribosome biogenesis in eukaryotes
pps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100975490 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
100975490 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pps03019
]
100975490 (XRN1)
03009 Ribosome biogenesis [BR:
pps03009
]
100975490 (XRN1)
03016 Transfer RNA biogenesis [BR:
pps03016
]
100975490 (XRN1)
03036 Chromosome and associated proteins [BR:
pps03036
]
100975490 (XRN1)
Messenger RNA biogenesis [BR:
pps03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
100975490 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
100975490 (XRN1)
Ribosome biogenesis [BR:
pps03009
]
Eukaryotic type
Pre-60S particles
RNases
100975490 (XRN1)
Transfer RNA biogenesis [BR:
pps03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
100975490 (XRN1)
Chromosome and associated proteins [BR:
pps03036
]
Eukaryotic type
Gene silencing
piRNA pathway
100975490 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
100975490
NCBI-ProteinID:
XP_003826568
Ensembl:
ENSPPAG00000010180
UniProt:
A0A2R8ZBD9
LinkDB
All DBs
Position
2:complement(140215062..140359614)
Genome browser
AA seq
1693 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHHCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAVEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWAALDKNEGEMITSKDNLEDET
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
YWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWP
HLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEH
YLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFD
SRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSS
SSSVSSGHLGGLNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQHFQPTIQEKGAVL
PQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNPGIEN
FLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMKGTRMLKEILKIDGSNTVDHKNEIKQ
IANEIPISSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPV
STPVTELSRICSLVGMPQPDFSFLRTPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAAL
FALQQLGSLGMNFPLPSPVFANYPSAVPPGTIPPVFPPPTANIMPSSSHLFGSMPWGPSV
PVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQ
TSQPDSSNIVKVSPRESSSASLKSSPIAQPASFQVETASQGHSISHHKSTPISSSRRKSR
KLAVNFGVSKPSE
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcagagcggtatccctgtctcagcgaagtg
gtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattata
catcactgctcccatcctaatgatgatgatgttcactttagaatttcagatgataaaatc
tttactgatatttttcactacctggaggtgttgtttcgcattattaaacccaggaaagtg
ttctttatggctgtagatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggagg
cgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcagtagagaagggagaa
actcttcctacagaggccagatttgattccaactgtatcacaccaggaactgaatttatg
gccaggttacatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtca
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacac
tgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttttctctcttaagagaagaagttcgatttggtggcaaaaaaacacaacgggtatgtgct
ccagaagaaactacatttcaccttctacacttgtctttaatgagagagtatattgactat
gagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatggggtttcttgttggtaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatgttaccatcctgccagaa
cttgggggttatattaatgaaagtgggcacctcaacttacctcgatttgagaaatacctt
gtgaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaaatgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgtcgcagcagaagaa
gccaggaactacaaggaaaagaaaaagttaaagggccaggaaaattctctgtgttgggct
gctttagacaaaaatgaaggcgaaatgataacttctaaggataatttagaagatgagact
gaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacg
aagatgggggttgacgtagtatctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtat
tatccttatcattatgcacctttcctgtctgatatacacaacatcagtacactcaaaatc
cattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gccagcaaaaatttacttcctgcatgctaccagcatttgatgaccaatgaagactcacca
attatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaggaatgg
gaagctgtggtgttaatcccttttattgatgagaagcgattattggaagccatggagaca
tgtaaccactccctcaaaaaggaagagaggaaaagaaaccaacatagtgagtgcctaatg
tactggtatgatagagacacagagtttatctatccttctccatggccagaaaagttccct
gccatagaacgatgttgtacaaggtataaaataatatccttagatgcttggcgtgtagac
ataaacaaaaacaaaataaccagaattgaccagaaagcattatatttctgtggatttcct
actctgaaacacatcaaacacaaattttttttgaagaaaagtggtgttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtggatgcagaatcagatgaa
cttaccgtagaaaatgtagcttcatcagtgcttggaaaatctgtctttgttaattggcct
caccttgaggaagctagagtcgtggctgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttattcaggaagaactgccccaccatctaaagtggtt
catcttggagataaagaacaatctaactgggcaaaagaagtacaaggaatttcagaacac
tacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtgg
tcaaaacaagttgttccttttgtttatcaaactattgtcaaggacatccgagctttcgac
tcccgtttctccaatatcaaaacattggatgatttgtttcctctgagaagtatggtcttt
atgctgggaactccctattatggctgcactggagaagttcaggattcaggtgatgtgatt
acagaaggtaggattcgtgtgattttcagcattccatgtgaacccaatcttgatgcttta
atacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaac
aagaaaaatgaggaggtacctggatatactaagaaagttggaagtgaatggatgtattca
tctgcagcagaacaacttctggcagagtacttagagagagctccagaactatttagttat
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaat
gagaatggtgctgaaaaagttcaagaaattattacttggctaaaaggacatcctgtcagt
actttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtaacagtg
aaaccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggat
gcagaattttgtctttttgaccgtgttgtaaatgtgagagaaaacttctcagttccagtt
ggccttcgaggcaccatcataggaataaaaggagctaatagagaagccgatgtactattt
gaagtattatttgatgaagaatttcctggagggttaacaataagatgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaact
ggaaatcagaagttgacagccatcgtaaaaccacaaccagctgtacatcaacatagctca
agttcatcagtttcctctgggcatttgggaggcctcaaccattcccctcaatcacttttt
gttcctactcaagtacctactaaagatgatgatgaattctgcaacatttggcagtcctta
cagggatctggaaagatgcaacactttcagccaactatacaagagaagggtgcagttcta
cctcaagaaataagccaagtaaatcaacatcataaatctggctttaatgacaacagtgtt
aaatatcagcaaagaaaacatgaccctcacagaaaatttaaagaagagtgtaagagtcct
aaagctgagtgttggtcccaaaaaatgtccaataagcagcctaaccctggaattgagaac
tttttagcatctttgaatatctccaaagaaaatgaagtacagtcatctcatcatggggag
cctccaagtgaagagcatttgtcaccacagtcatttgccatgaagggaacacggatgctt
aaagaaattctaaaaattgatggctctaacactgtggaccataagaatgaaatcaaacag
attgctaatgaaatccctatttcctctaacagaagagatgaatatggattaccctctcag
cctaaacaaaataagaaattagcatcttatatgaacaagcctcacagtgctaatgagtac
cataatgttcagtctatggacaatatgtgttggcctgcccccagccagatccctcctgta
tccacaccagtaactgaactttctcgaatttgttcccttgttggaatgccacaacctgat
ttctcctttcttaggacgccacagacaatgaccgtttgccaagtaaaattatctaatggc
ttactggtacacgggccacagtgccactctgaaaatgaagccaaagagaaagctgcactt
tttgctttacaacagttgggctccttaggcatgaatttccctttgccttcaccagtattt
gcaaattatccttcagctgtaccacctggaaccattcctccagtctttcccccacctact
gctaatataatgccttcatcgtctcatctctttggctcaatgccatggggaccatcggtg
ccagttcctgggaagcccttccatcatactttatattctgggaccatgcccatggctggg
ggaataccagggggtgtgcacaatcagtttatacctctgcaggttactaaaaaaagggtt
gcaaacaaaaagaactttgagaataaggaagcccagagttctcaagccactccagttcag
actagccagccagattcttccaacattgtcaaagtaagtccacgggagagctcatcagct
tctttgaagtcctctccgattgctcaacctgcatcttttcaagttgaaactgcctctcaa
ggccatagtatatctcatcataagtcaacaccaatctcttcttcaagaagaaaatcaaga
aaactggctgttaattttggtgtttctaaaccttctgagtaa
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integrated database retrieval system
