Pan paniscus (bonobo): 100977172
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Entry
100977172 CDS
T02283
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X2
KO
K06823
collagen type XVIII alpha
Organism
pps
Pan paniscus (bonobo)
Pathway
pps04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100977172 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pps04147
]
100977172 (COL18A1)
00535 Proteoglycans [BR:
pps00535
]
100977172 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
pps00536
]
100977172 (COL18A1)
Exosome [BR:
pps04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100977172 (COL18A1)
Proteoglycans [BR:
pps00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
100977172 (COL18A1)
Glycosaminoglycan binding proteins [BR:
pps00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100977172 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100977172
NCBI-ProteinID:
XP_034803833
LinkDB
All DBs
Position
22:41474960..41590499
Genome browser
AA seq
1757 aa
AA seq
DB search
MAPYPCGCHILLLLFCCLAAARADLLNLNWLWFSNEDTSHTATTIPEPQGPLPVQPTADT
TTHVTPRNGSTEPATAPGSPEPPSELLEDGQDTPTSAESPDAPEENIAGVGAEILNVAKG
IRSFVQLWNDTVPTESLARAETLVLETPVGPLALAGPSSTPQENGTTLWPSRGIPSSLGA
HTTEAGTLPAPTPSPPSLGRPWAPLTGPSVPPPSSGRASLSSLLGGAPPWGSLQDPDSQG
LSPAAAAPSQQLQRPDVRLRTPLLHPLVTGSLGKHAAPSAFSSGLPGALSQVAVTTLIRD
SGAWVSHVANSVGPGLANNSALLGADPEAPAGRCLPLPPSLPVCGRLGISHFWLPNHLHH
ESGEQVRAGARAWGGLLRTHCHPFLAWFFCLLLAPPCGSVPPPAPPPCRQFCEALQDACW
SRLGGGQLPVACASLPTQEDGYCVFIGPAAERVSEEVGLLQLLGDPPPQQVTQTDDPDVG
LAYVFGPDANSGQVARYHFPSLFFRDFSLLFHIRPATEGPGVLFAITDSAQAVVLLGVKL
SGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFVGQWTHLALSVAGGFVALYVDCEEFQR
MPLARSSRGLELEPGAGLFVAQAGGADPDKFQGVIAELKVRRDPQVSPMHCLDEEGDDSD
GASGDSGSGLGDARELLREETGAALKPRLPTPPPVTTPPLAGGSSTEDSRSEEIEEQTTV
ASLGAQTLPGSDSVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGQAGPPGSPCLPGP
PGLPCPVSPLGPAGPALQPVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFP
GTPGDVGPKGDKGDPGIGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRG
PRGFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGVPGREGPPGFPGLPGPPGPPGR
EGPPGRTGQKGSLGEAGAPGHKGSKGDPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGP
GLPAGFDDMEGSGGPFWSTARSAAGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFP
GLPGREGIAGPQGPKGDRGSQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSV
PGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGSALGPAQKGAKG
EPGFRGPPGPYGRPGYKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPP
GPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLE
AEMKGEKGDRGDAGQKGERGEPGGGGFFSSSLPGPPGPPGPRGYPGIPGPKGESIRGQPG
PPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTTG
TMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVRNGFRKVQLEARTPLPRG
TDNEVAALQPPVVQLHDSNPYPRREHPHPTARPWRADDILASPPRLPEPQPYPGAPHHSS
YVHLRPARPTSPPAHTHRDFQPVLHLVALNSPLSGSMRGIRGADFQCFQQARAVGLAGTF
RAFLSSRLQDLYSIVRRADRTAVPIVNLKDELLFPSWEALFSGSEGPLKPGARIFSFDGK
DVLRHPTWPQKSVWHGSDPNGRRLTESYCETWRTEAPSATGQASSLLGGRLLGQSAVSCH
HAYIVLCIENSFMTASK
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atggctccctacccctgtggctgccacatcctgctgctgctcttctgctgcctggcggct
gcccgggccgacctgctgaacctgaactggctttggttcagtaatgaggacaccagccac
acagctaccacgatccctgagccccaggggcccctgcctgtgcagcccacagcagatacc
accacacacgtgaccccccggaatggttccacagagccagcgacagcccctggcagccct
gagccaccctcagagctgctggaagatggccaggacacccccacttctgccgagagcccg
gacgcgccagaggagaacattgccggtgttggagccgagatcctgaacgtggccaaaggc
atccggagcttcgtccagctgtggaatgacactgtccccactgagagcttggccagggcg
gaaacgctggtcctcgagactcccgtgggcccccttgccctcgctgggccttccagcacc
ccccaggagaatgggaccactctctggcccagccgtggcattcctagctctctgggcgcc
cacacaaccgaggctggcaccttgcctgcacccaccccatcgcctccctccctgggcagg
ccctgggcaccactcacggggccctcagtgccaccaccgtcttcaggtagagcttctctc
tcctccttgctgggcggggcccctccctggggaagcctgcaggacccagacagccaagga
ctctcgcccgccgcagccgctcccagccagcagctccaacgccctgacgtccgcctgcgc
acgccacttctgcaccccctggtgacgggctccctgggcaagcacgcggccccctctgcc
ttctcctctgggctcccgggcgcactgtctcaggtcgcagtcaccactttaatcagggac
agcggtgcttgggtctcccacgtggctaactctgtggggccgggtctcgctaataactct
gccctgctcggggctgaccccgaggcccctgccggtcgctgcctgcccctgccgccctcc
ctgccagtctgcggccgcctgggcatctcacacttctggctgcccaaccacctccaccac
gagagcggtgagcaggtgcgggccggggcacgggcgtgggggggcctgctgcggacgcac
tgccaccccttcctcgcctggttcttctgcctgctgctggcccccccatgcggcagcgtc
ccgccgcccgccccgccaccctgccgccagttctgcgaggccctgcaggatgcgtgttgg
agccgcctgggcgggggccagctgcccgtcgcctgtgcctcgctcccgacccaggaggac
gggtactgtgtgttcattgggccggctgcagagcgcgtcagcgaggaggtagggctgctg
cagctccttggggaccccccgccccagcaggtcacccagacggatgaccccgacgtcggg
ctggcctacgtctttgggccagatgccaacagtggccaagtggcccggtaccacttcccc
agcctcttcttccgtgacttctcactgctgttccacatccggccagccacagagggccca
ggggtgctgttcgccatcacggactcggcacaggccgtggtcttgctgggcgtgaagctc
tctggggtgcaggacgggcaccaggacatctccctgctctacacggaaccaggtgcaggc
cagacccacacagccgccagcttccggctccccgccttcgtcggccagtggacacactta
gccctcagtgtggcgggtggctttgtggccctctatgtggactgtgaggagttccagaga
atgccgcttgctcggtcctcacggggcctggagctggagcctggcgccgggctcttcgtg
gctcaggccgggggagcggaccctgacaaattccagggggtgatcgctgagctgaaggtg
cgcagggacccccaggtgagccccatgcactgcctggacgaggaaggcgatgactcagat
ggggcatccggagactctggcagcgggctcggggacgcccgggagcttctcagggaggag
acgggtgcggccctaaaacccaggctccccacgccacccccggtcaccactccacccttg
gctggaggcagcagcacggaagattccagaagtgaagaaatcgaggagcagaccacggtg
gcttcgttaggagctcagacacttcctggctcagattctgtctccacgtgggacgggagt
gtccggacccctgggggccgtgtgaaagagggcggcctgaaggggcagaaaggggagcca
ggtgttccgggcccacctggccaggcaggccccccaggatccccatgcctacctggtccc
ccgggtctcccgtgcccggtgagtcccctgggtcctgcaggcccagcgttgcaacctgtc
cccggaccacaaggacccccagggcctccggggagggacggcacccctggaagggacggc
gagccgggtgaccctggtgaagacggaaagccgggcgacaccgggccacagggcttcccc
gggactccaggggatgtaggccccaagggcgacaagggagaccctgggattggagagaga
gggcccccaggaccccaagggcctccggggcccccaggaccctccttcagacacgacaag
ctgaccttcattgacatggagggatctggcttcgggggcgatctggaggccctgcggggt
cctcgaggcttccctggacctcccggaccccctggtgtcccaggcctgcccggcgagcca
ggccgctttggggtgaacagctccgacgtcccaggacccgccggccttcctggtgtgcct
gggcgcgagggtccccccgggtttcccggcctccccggacccccaggccctccgggaaga
gaggggcccccaggaaggactgggcagaaaggcagcctgggtgaagcaggcgccccagga
cataaggggagcaagggagaccccggtcctgctggcgctcgtggggagagcggcctggca
ggagcccctggacccgctggaccaccaggcccccctgggccccctgggccaccaggacca
ggactccccgctggatttgatgacatggaaggctccggggggcccttctggtcaacagcc
cgaagcgctgctgggccacagggaccccccggcctgccgggactcaagggggatcctggc
gtgcctgggctgccaggggcgaagggagaagttggagcagatggagtccccgggttcccc
ggcctccctggcagagagggcattgctgggccccaggggccaaagggagacagaggcagc
cagggagaaaagggagatccagggaaggacggagtcgggcagccgggcctccctggcccc
cccggacccccggggcctgtggtctacgtgtcggagcaggacggatccgtcctgagcgtg
ccgggacctgagggccggccgggtttcgcaggctttcccggacctgcaggacccaagggc
aacctgggctctaagggcgaacgaggctccccgggacccaagggtgagaagggtgaaccg
ggcagcatcttcagccccgacggcagtgccctgggccctgcccagaaaggagccaaggga
gagccgggcttccgaggacccccgggtccatacggacggccagggtacaagggagagatt
ggctttcctggacggccgggtcgccccgggatgaacggattgaaaggagagaaaggggag
ccgggagatgccagccttggatttggcatgaggggaatgcccggccccccaggacctcca
gggcccccaggccctccagggactcccgtttatgacagcaatgtgtttgctgagtccagc
cgccccgggcctccaggattgccagggaatcagggccctccaggacccaagggcgccaaa
ggagaagtgggcccccccggaccaccagggcagtttccgtttgactttcttcagttggag
gctgaaatgaagggggagaagggagaccgaggtgatgcaggacagaaaggcgaaaggggg
gagcccgggggcggcggtttcttcagctccagcctgccaggcccccccggccccccaggc
ccacgtggctaccccgggattccaggtcccaagggagagagcatccggggccagcccggc
ccacctggacctcagggaccccccggcatcggctacgaggggcgccagggccctcccggc
cccccaggcccccccggccccccagggcccccttcatttcccggccctcacaggcagact
atcagtgttcccggccctccgggcccccctgggccccctgggccccctggaaccactgga
accatgggcgcctcctcaggggtgaggctctgggctacgcgccaggccatgctgggccag
gtgcacgaggttcccgagggctggctcatcttcgtggccgagcaggaggagctctacgtc
cgcgtgcgcaacgggttccggaaggtccagctggaggcccggacaccactcccacgaggg
acggacaacgaagtggccgccttgcagccccccgtggtgcagctgcacgacagcaacccc
tacccgcggcgggagcacccccaccccaccgcgcggccctggcgggcagatgacatcctg
gccagcccccctcgcctgcccgagccccagccctaccccggagccccgcaccacagctcc
tacgtgcacctgcggccggcgcgacccacaagcccacccgcccacacccaccgcgacttc
cagccggtgctccacctggttgcgctcaacagccccctgtcaggcagcatgcggggcatc
cgcggggccgacttccagtgcttccagcaggcgcgggccgtggggctggcgggcaccttc
cgcgccttcctgtcctcgcgcctgcaggacctgtacagcatcgtgcgccgtgccgaccgc
acagctgtgcccatcgtcaacctcaaggacgagctgctgtttcccagctgggaggctctg
ttctcaggctctgaaggtccgctgaagcccggggcacgcatcttctcctttgacggcaag
gacgtcctgaggcaccccacctggccccagaagagcgtgtggcacggctcggaccccaac
gggcgcaggctgaccgagagctactgtgagacgtggcggacggaggctccctcggccacg
ggccaggcctcctcgctgctggggggcaggctcctggggcagagcgccgtgagctgccat
cacgcctacatcgtgctctgcattgagaacagcttcatgactgcctccaagtag
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