Pan paniscus (bonobo): 100980925
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Entry
100980925 CDS
T02283
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-4(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
pps
Pan paniscus (bonobo)
Pathway
pps04151
PI3K-Akt signaling pathway
pps04510
Focal adhesion
pps04512
ECM-receptor interaction
pps04518
Integrin signaling
pps04820
Cytoskeleton in muscle cells
pps04974
Protein digestion and absorption
pps05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
100980925
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100980925
04518 Integrin signaling
100980925
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
100980925
09142 Cell motility
04820 Cytoskeleton in muscle cells
100980925
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100980925
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
100980925
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pps04147
]
100980925
00536 Glycosaminoglycan binding proteins [BR:
pps00536
]
100980925
Exosome [BR:
pps04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
100980925
Glycosaminoglycan binding proteins [BR:
pps00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100980925
Hyaluronan
Extracellular matrix or blood plasma proteins
100980925
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
VWA_3
vWA_SIBA-E
SRPRB
Collagen
Motif
Other DBs
NCBI-GeneID:
100980925
NCBI-ProteinID:
XP_054965431
LinkDB
All DBs
Position
2:complement(15126316..15165707)
Genome browser
AA seq
1470 aa
AA seq
DB search
METWKIFWGIILLEAGFGFKSQRIVCREASLGDVVFLVDTNINPQHARSVRNFLYILVNS
FNISSETIHVGLAKYSDVPHSEFLLSTYHHKGDVLRHIRQFQFKPGGKKMGLALKFILDH
HFQEASGSRASQGVPQIAVVISSGPVEDHVHGPVEALRRAGILLYAIGVRDAVWAELREI
ASSPQENFTSFVPNFSGLSNLAQKLQQELCDMLAKAAPHVDHVSPACREAALADIVFLVD
SSTSIGPQNFQKVKNFLYSVILGLDISSDRVRVGLAQYNDNIYPAFQLNQHPLKSMILEQ
IQNLPYRTGGTNTGSALEFIRTNYLTEESGSRAKDRVPQIVILVTDRESNDEVQEVADRL
KEDGVVVYVVGVNVQDVQELQKIASEPFGKFLFNTENFNILQDFSGSILQTLCSAVEGKI
KEFIKAYADVVFLADTSQDTSRASFQRMQNILSRVVGMLEVGRDKYQIGLAQYGDQGHTE
FLLNTYKTQNEMIAHIHERFVPLGRSRRTGKALPYLLQTFFQEEAGSRFLQGIPQYAVVI
NSGKSEDEVQDAAQRLREKGVKVMSVGVQDFDRRELEGMGSPDLVYDMQTEDEVRHIVED
MNVVIQGTGQQEHRITANEEAVGACATAVPADLIFLIEEFSRVRQPNFQQVVNFLKTIVS
SLSIRPDTVRFGLVFYSEEPRLEFSLDAFQNPAKILEHLDKLTYRERKGRTKTGAALDFL
RNEVFIQEKGSRSNHGVQQIAVVITEGFSQDRVSRPASRLRRAGVTIYAVGTHNVSESKD
LEKIASYPPWKYSVPLESFLQLFVVGSKLTHQLCSEMVDSKVSISGTSYPLQEGCVHIEK
ADIYFLIDGSGSIYPEDFLEMKVFMNEVIKMFXIGPNRVQFGVIQYSDKIKSKFILSQYP
SVAELKVAIDNIQQGEGGTKTGEALNNMTQVFADTSRINVARYLIVITDGKSSDSVAEAA
EGLRANGVNIYAIGIREANIDELKEIAKDKIFFVYEFDLLKDIQKEVVQDICSSEACKNS
KADIIFLIDGSESISPKDFEKMKRFVESMVNQSNIGTDGIQIGLLQFSSIPLEEFRLNQY
SSKVDIYRATFDVQQMRDGTRTGKALNFTLPFFDSSKGGRPSVQQYLIVITDGVAQDNVI
IPAKALRDKNIIIFAIGVGEAKKSQLLEITNDEDKVYHDVNFEALQNLEKEILSKVCDPQ
GCNLDLSVGVDISTPSKKVQQKFQGLLPELMQQLALLSNISCGISDQIDPRFRYLVPGSN
GQLTFDSDFEKYSYEIIQKFLVHQAARNNNMDVNFLQSLGDNAIHLSSAKVKVLLVFTDG
LDDDLKRLKKTSEFLHSRGFSGLLIIGLEGVHKLEELQELEFGRGFAYKQPLSIKLQSLP
SVLLKRLDTIVERTCCNIYAKCFGEDGYRGDYGSSGRKGEKGFDGLPSHPGEEGRYDLLF
ANVLSLNFKQILGLVVHIHQLIQLEHVSRP
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atggagacttggaagatattttgggggatcatcctccttgaagctggttttggcttcaag
tcacagaggattgtctgcagggaagcctctctgggagatgttgtgtttctggtggacacc
aacatcaacccccaacatgcacgcagtgtgcggaacttcttgtacattctggtaaacagc
ttcaacatcagcagtgagaccatccatgtgggtctggccaagtatagcgatgtgccccat
tcggagttcttgctttccacctaccaccacaaaggtgatgtgttgagacacattcggcag
tttcaatttaagcctgggggcaagaagatgggcctggccctgaagttcattctagaccac
cacttccaggaagcatcagggagccgggcaagccaaggggtacctcagatcgccgtggtg
atcagcagtgggccagttgaggaccatgtccatggacctgtggaggcattgaggagggca
ggcatcctgctttatgctattggcgtcagagatgcagtttgggcagagctcagggaaatt
gccagtagtcctcaggagaattttacctcctttgttcctaacttctctggtctgagcaat
ctcgcccagaagctgcagcaggaactctgtgatatgttggcaaaggcagctccacatgtt
gaccacgtctctccggcttgcagagaagcagccctggcagacattgtgtttctagtagac
agttcaactagcattggaccccaaaacttccagaaagtcaagaacttcctttactccgtc
atcttggggcttgacatcagcagtgaccgtgtccgagtgggacttgcccagtataatgac
aacatctacccagccttccagctgaaccagcaccctctgaagagcatgatcttggagcag
atccagaatctgccataccgcacaggaggcacaaacacagggagcgccctggagtttatc
aggaccaactatttgactgaggagtctggcagtcgggccaaggacagagttcctcagata
gttatcctggtgactgacagggagtcaaatgatgaggtccaggaggtggctgaccggttg
aaagaagatggagttgttgtgtatgtggtaggggtcaatgtccaggatgtccaagagttg
caaaaaatagccagtgagccatttgggaagtttctcttcaacaccgaaaacttcaatatc
ctgcaggatttttcaggaagtattcttcagactctgtgctcagcagtggagggtaagata
aaagaattcatcaaagcctatgcagacgtggtctttcttgctgacacatcacaggacaca
tcacgggccagtttccagaggatgcagaatatcctctccagagtggttggcatgctggag
gttggcagggacaagtaccaaattgggctggctcagtatggtgaccaaggtcacactgag
tttttgctcaatacctacaagacccagaatgagatgatagctcacattcatgagcgtttt
gtgcccctgggtcgttccaggaggacaggcaaggcactgccataccttcttcagacattc
ttccaggaggaagcaggaagccggtttctccagggcattccccagtatgcagtggtcatt
aattcaggcaaatcagaggatgaagtccaggatgctgcacagagactaagagagaaaggt
gtgaaagttatgtctgtgggtgtgcaggactttgacaggagagaactggaagggatggga
tccccagaccttgtctatgatatgcagacagaagatgaagtcagacacatagtagaagat
atgaatgtggtgatccaagggactggacagcaggaacacaggattacagccaacgaggag
gctgtaggagcgtgcgcaactgctgtcccggctgacttaatattcctcattgaggaattt
agcagggttaggcaacccaatttccaacaagttgtcaatttcctaaagaccattgtcagt
tctctaagcattcgtcctgatactgtgagatttggcttggtcttctacagtgaggaacca
cgacttgaattttcactggatgcatttcagaatccagccaaaatcttggagcatttggac
aaattaacctaccgggaaagaaaaggaaggacgaagactggtgctgcgttagatttcctg
aggaacgaggttttcattcaggagaagggtagccggtccaaccacggtgtgcagcagata
gctgtagtcatcacagaaggcttctcccaagacagagtatctagacccgcttctcgcctc
cgaagggcaggcgtcaccatctatgcagtgggcacccacaatgtctcagagagtaaggac
ctggagaagatagcatcatatcctccttggaagtattcagtccccctggaatcctttttg
cagctcttcgtagtaggaagcaagcttacacaccagctctgctctgagatggtggacagt
aaagtttccattagtgggacgagctatcccctacaagaaggttgtgtgcacatcgaaaag
gcagatatttacttccttattgatgggtctggcagcatctatccagaagattttcttgag
atgaaggtgttcatgaatgaagtgataaagatgttctagatcgggcccaacagagtgcag
tttggagtgattcagtactcagacaaaattaaaagtaaatttatcctcagccagtatccc
agtgtggcagagctgaaggtagccattgataacatccagcagggggaaggtggcaccaaa
actggtgaggccttgaacaacatgactcaggtttttgcagacaccagccgaatcaatgtt
gctcgatatcttatagtcatcactgatggtaaatcttcagactcggtggctgaggctgca
gagggattgagggcaaatggagttaacatttatgccattggaataagagaagctaacatt
gatgagcttaaggaaatagctaaagacaagatattttttgtgtatgagtttgatttactg
aaggacatccaaaaagaagtggtacaggacatctgctcctcagaggcctgtaagaatagt
aaagctgacattatcttcctgatagatggttcagaatctatctccccaaaagactttgaa
aagatgaaaagatttgtggagagcatggtgaaccaatctaatattggtactgatggaatt
caaattggccttttgcagttcagctcaatccccctggaagaattcaggctcaaccaatac
tcctcaaaggtggacatttacagggccacctttgatgttcagcagatgagggatggcacc
cgcactgggaaagctctgaatttcactctgcctttttttgacagttcaaaaggagggaga
cccagtgttcaacaatatttgattgtgatcaccgatggggtggcccaagataatgtaatc
ataccagccaaagccctcagggacaaaaacataattatttttgccattggggtgggagaa
gccaaaaaatcgcagcttttggagatcactaatgatgaggacaaagtgtaccatgatgta
aattttgaggccctgcagaacctggagaaggaaattctttctaaggtctgtgatccacaa
ggatgcaacctggatttgtctgtaggagttgatatctcaactccttcaaagaaagttcag
cagaagtttcaagggttactgccagagctgatgcaacagttggctttactttctaacatc
agctgtggcatttctgatcagatcgacccaagattccgctacttggttcctggctcaaat
ggccagcttacctttgactcagactttgaaaaatacagttatgagatcatccagaagttc
ttggttcatcaggctgccaggaataacaatatggatgtgaactttttgcagtccttggga
gataatgctattcatctctcttctgctaaagtaaaggtccttttagtgtttacagatgga
ctggatgatgatttaaaaagactgaaaaaaacatcggagtttctccacagcagaggattc
tctggactcctaatcattggcctggaaggtgtccataaattagaagagctccaggagctg
gaatttggcagagggtttgcatataagcaacctctgagcatcaaactgcaatccctccca
agcgtcttactgaagcgacttgatacaattgtggaaagaacatgctgcaatatatatgca
aagtgttttggagaagatgggtacagaggtgattatgggagttctgggaggaagggagag
aagggttttgatgggttacccagtcatcctggtgaggaaggcagatatgacttgttattt
gccaatgttttaagtctgaactttaaacagattcttggactggtggttcatatccatcag
ctcattcaacttgagcatgtgtctcgtccctag
DBGET
integrated database retrieval system
