Pan paniscus (bonobo): 100992019
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Entry
100992019 CDS
T02283
Symbol
SCN11A
Name
(RefSeq) sodium channel protein type 11 subunit alpha
KO
K04843
voltage-gated sodium channel type XI alpha
Organism
pps
Pan paniscus (bonobo)
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pps04040
]
100992019 (SCN11A)
Ion channels [BR:
pps04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
100992019 (SCN11A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
Motif
Other DBs
NCBI-GeneID:
100992019
NCBI-ProteinID:
XP_054965648
Ensembl:
ENSPPAG00000029217
LinkDB
All DBs
Position
2:complement(38797256..38904450)
Genome browser
AA seq
1792 aa
AA seq
DB search
MDDRCYPVIFPDERNFRPFTSDSLAAIEKRIAIQKEKKKSKDQTGEVPQPRPQLDLKASR
KLPKLYGDIPRELIGKPLEDLDPFYRNHKTFMVLNRKRTIYRFSAKHALFIFGPFSSIRS
LAIRVSVHSLFSMFIIGTVIINCVFMATGPAKNSNSNNTDIAECVFTGIYIFEALIKILA
RGFILDEFSFLRDPWNWLDSIVIGIAIVSYIPGITIKLLPLRTFRVFRALKAISVVSRLK
VIVGALLRSVKKLVNVIILTFFCLSIFALVGQQLFMGSLNLKCISRDCKNISNPEAYDHC
FEKKENSPEFKMCGIWMGNSACSIQYECKHTKINPDYNYTNFDNFGWSFLAMFRLMTQDS
WEKLYQQTLRTTGLYSVFFFIVVIFLGSFYLINLTLAVVTMAYEEQNKNVAAEIEAKEKM
FQEAQQLLKEEKEALVAMGIDRSSLTSLETSYFTPKKRKLFGNKKRKSFFLRESGKDQPP
GSDSDEDCQKKPQLLEQTKRLSQNLSLDHFDEHGDPLQRQRALSAVSILTITMKEQEKSQ
EPCLPCGENLASKYLVWNCCPQWLCVKKVLRTVMTDPFTELAITICIIINTVFLAMEHHK
MEASFEKMLNIGNLVFTSIFIAEMCLKIIALDPYHYFRRGWNIFDSIVALLSFADVMNCV
LQKRSWPFLRSFRVLRVFKLAKSWPTLNTLIKIIGNSVGALGSLTVVLVIVIFIFSVVGM
QLFGHSFNSRKSPKLCNPTGPTVSCLRHWHMGDFWHSFLVVFRILCGEWIENMWECMQEE
NTSSSSLCVIVFILITVIGKLVVLNLFIALLLNSFSNEERNGNLEGEARKTKVQLALDRF
RRAFCFVRHTLEHFCHKWCRKQNLPQQKEVTGGCAAQSKDIIPLVTEMKRGSETQEELGI
LTSVPKTLGIRHDWTWLAPLAEEEDDVEFSGEDNAQRITQPESERQAYELHQENKKPTSQ
RVQSVEIDMFSEDEPHLTIQDPRKKSDVTSILSECSTIDLQDGFGWLPEMVPKKQPERCL
PKGFGCCFPCCSVDKRKPPWVIWWNLRKTCYQIVKHSWFESFIIFVILLSSGALIFEDVR
LENQPKIQELLNCTDIIFTHIFILEMVLKWVAFGFGKYFTSAWCCLDFIIVIVSVTTLIN
LMELKSFRTLRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLVFCILGVYF
FSGKFGKCINGTDSVINYTIITNKSQCESGNFSWINQKVNFDNVGNAYLALLQVATFKGW
MDIIYAAVDSTEKEQQPAFESNSFGYIYFVVFIIFGSFFTLNLFIGVIIDNFNQQQKKIS
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPLNKCQGLVFDIVTSQIFDIIIISLIILN
MISMMAESYNQPKAMKSILDHLNWVFVVIFTLECLIKIFALRQYYFTNGWNLFDCVVVLL
SIVSTMISTLENQEHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFN
IGLLLFLIMFIYAILGMNWFSKVNPESGIDDIFNFKSFASSMLCLFQISTSAGWDSLLSP
MLRSKESCNSSSESCHLPGIATSYFVSYIIISFLIVVNMYIAVILENFNTATEESEDPLG
EDDFDIFYEVWEKFDPEATQFIKYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSEDR
LHCMDILFAFTARVLGGSDGLDSMKAMMEEKFMEANPLKKLYEPIVTTTKRKEEERGAAI
IQKAFRKYMMKVTKGDQGDQNDLENRPHSPLQTLCNGDLSSFGVAKGKVHCD
NT seq
5379 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagatgctacccagtaatctttccagatgagcggaatttccgccccttcact
tctgactctctggctgcaattgagaagcggattgccatccaaaaggagaaaaagaagtct
aaagaccagacaggagaagtaccccagcctcggcctcagcttgacctaaaggcctccagg
aagttgcccaagctctatggtgacattcctcgtgagctcataggaaagcctctggaagac
ttggacccattctaccgaaatcataagacatttatggtgttaaacagaaagaggacaatc
taccgcttcagtgccaagcatgccttgttcatttttgggcctttcagttcaatcagaagt
ttagccattagagtctcagtccattcattgttcagtatgttcattatcggcaccgttatc
atcaactgcgtgttcatggctacagggcctgctaaaaacagcaacagcaacaatactgac
attgcagagtgtgtcttcactgggatttatatttttgaagctttgattaaaatattggca
agaggtttcattctggatgagttttctttccttcgagatccatggaactggctggactcc
attgtcattggaatagcgattgtgtcatatattccaggaatcaccatcaaactattgccc
ctgcgtaccttccgtgtgttcagagctttgaaagcaatttcagtagtttcacgtctgaag
gtcatcgtgggggccttgctgcgctctgtgaagaagctggtcaacgtgattatcctcacc
ttcttttgcctcagcatctttgccctggtaggtcagcagctcttcatgggaagtctgaac
ctgaaatgcatctcaagggactgtaaaaatatcagtaacccggaagcttatgaccattgc
tttgaaaagaaagaaaattcacctgaattcaaaatgtgtggcatctggatgggtaacagt
gcctgttccatacaatatgaatgtaagcacaccaaaattaatcctgactataattatacg
aattttgacaactttggctggtcttttcttgccatgttccggctgatgacccaagattcc
tgggagaagctttatcaacagaccctgcgtactactgggctctactcagtcttcttcttc
attgtggtcattttcctgggctccttctacctgattaacttaaccctggctgttgttacc
atggcatatgaggagcagaacaagaatgtagctgcagagatagaggccaaggaaaagatg
tttcaggaagcccagcagctgttaaaggaggaaaaggaggctctggttgccatgggaatt
gacagaagttcacttacttcccttgaaacatcatattttaccccaaaaaagagaaagctc
tttggtaataagaaaaggaagtccttctttttgagagagtctgggaaagaccagcctcct
gggtcagattctgatgaagattgccaaaaaaagccacagctcctagagcaaaccaaacga
ctgtcccagaatctatcactggaccactttgatgagcatggagatcctctccaaaggcag
agagcactgagtgctgtcagcatcctcaccatcaccatgaaggaacaagaaaaatcacaa
gagccttgtctcccttgcggagaaaacctggcatccaagtacctcgtgtggaactgttgc
ccccagtggctgtgcgttaagaaggtcctgagaactgtgatgactgacccatttactgag
ctggccatcaccatctgcatcatcatcaacactgtcttcttggccatggagcatcacaag
atggaggccagttttgagaagatgttgaatatagggaatttggttttcactagcattttt
atagcagaaatgtgcctaaaaatcattgcgctcgatccctaccactactttcgccgaggc
tggaatatttttgacagcattgttgctcttctgagttttgcagatgtaatgaactgtgta
cttcaaaagagaagctggccattcttgcgttccttcagagtgctcagggtcttcaagtta
gccaaatcctggccaactttgaacacactaattaagataatcggcaactctgtcggagcc
cttggaagcctgactgtggtcctggtcattgtgatctttattttctcagtagttggcatg
cagctttttggccatagcttcaattcccgaaagagtccaaaactctgtaacccgacaggc
ccgacagtctcatgtttacggcactggcacatgggggatttctggcactccttcctagtg
gtattccgcatcctctgcggggaatggatcgaaaatatgtgggaatgtatgcaagaagag
aatacatcatcatcatcattgtgtgttattgtcttcatattgatcacagtgataggaaaa
cttgtggtgctcaacctcttcattgccttactgctcaattcctttagcaatgaggaaaga
aatggaaacttagaaggagaggccaggaaaactaaagtccagttagcactggatcgattc
cgccgggctttttgttttgtgagacacactcttgagcatttctgtcacaagtggtgcagg
aagcaaaacttaccacagcaaaaagaggtgacaggaggctgtgctgcacaaagcaaagac
atcattcccctggtcacggagatgaaaaggggctcagagacccaggaggagcttggtata
ctaacctctgtaccaaagaccctgggcatcaggcatgattggacttggttggcaccactt
gcggaggaggaagatgatgttgaattttctggtgaagataatgcacagcgcatcacacaa
cctgagtctgaacgacaggcctatgagctccatcaggagaacaagaagcccaccagccag
agagttcaaagtgtggaaattgacatgttctctgaagatgagcctcatctgaccatacag
gatccccgaaagaagtctgatgttaccagtatactatcagaatgtagcaccattgatctt
caggatggctttggatggttacctgagatggttcccaaaaagcaaccagagagatgtttg
cccaaaggctttggttgctgctttccatgctgtagcgtggacaagagaaagcctccctgg
gtcatttggtggaacctgcggaaaacctgctaccaaatagtgaaacacagctggtttgag
agctttattatctttgtgattctgctgagcagtggggcactgatatttgaagatgttcgc
cttgagaaccaacccaaaatccaagaattactaaattgtactgacattatttttacacat
atttttatcctggagatggtactaaaatgggtagccttcggatttggaaagtatttcacc
agtgcctggtgctgccttgatttcatcattgtgattgtctctgtgaccaccctcattaac
ttaatggaattgaagtccttccggactcttcgagcactgaggcctcttcgtgcgctgtcc
cagtttgaaggaatgaaggtggtggtcaatgctctcataggtgccatacctgccattctg
aatgttttgcttgtctgcctcattttctggctcgtattttgtattctgggagtatacttc
ttttctggaaaatttgggaaatgcattaatggaacagactcagttataaattatactatc
attacaaataaaagtcaatgtgaaagtggcaatttctcttggatcaaccagaaagtcaac
tttgacaatgtgggaaatgcttacctcgctctgctgcaagtggcaacatttaagggctgg
atggatattatatatgcagctgttgattccacagagaaagaacaacagccagcgtttgag
agcaattcattcggttacatttacttcgtagtctttatcatctttggctcattcttcact
ctgaatctcttcattggcgttatcattgacaacttcaaccaacagcagaaaaagataagt
ggccaagacatttttatgacagaagaacagaagaaatactataatgcaatgaaaaaatta
ggatccaaaaaacctcaaaaacccattccacggcctctgaacaaatgtcaaggtctcgtg
ttcgacatagtcacaagccagatctttgacatcatcatcataagtctcattatcctaaac
atgattagcatgatggctgaatcatacaaccaacccaaagccatgaaatccatccttgac
catctcaactgggtctttgtggtcatctttacattagaatgtctcatcaaaatctttgct
ttgaggcaatactacttcaccaatggctggaatttatttgactgtgtggtcgtgcttctt
tccattgttagtacaatgatttctaccttggaaaatcaggagcacattcctttccctccg
acgctcttcagaattgtccgcttggctcggattggccgaatcctgaggcttgtccgggct
gcacgaggaatcaggactctcctctttgctctgatgatgtcgcttccttctctgttcaac
attggtcttctactctttctgattatgtttatctatgccattttgggtatgaactggttt
tccaaagtgaatccagagtctggaattgatgacatattcaacttcaagtcttttgccagc
agcatgctctgtctcttccagataagcacatcagcaggttgggattccctgctcagcccc
atgctgcgatcaaaagaatcatgtaactcttcctcagaaagctgccacctccctggcata
gccacatcctactttgtcagttacattatcatctcctttctcattgttgtcaacatgtac
attgctgtgattttagagaacttcaatacagccactgaagaaagtgaggaccctttgggt
gaagatgactttgacatattttatgaagtgtgggaaaagtttgacccagaagcaacacaa
tttatcaaatattctgccctttctgactttgctgatgccttgcctgagcctttgcgtgtc
gcaaagccaaataaatatcaatttctagtaatggacttgcccatggtgagtgaagatcgc
ctccactgcatggatattcttttcgccttcaccgctagggtactcggtggctctgatggc
ctagatagcatgaaagcaatgatggaagagaagttcatggaagccaatcctctcaagaag
ttgtatgaacccatagtcaccaccaccaagagaaaggaagaggaaagaggtgctgctatt
attcaaaaggcctttcgaaagtacatgatgaaggttaccaagggtgaccaaggtgaccaa
aatgacttggaaaacaggcctcattcaccactccagactctttgcaatggagacttgtct
agctttggggtggccaagggcaaggtccactgtgactga
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integrated database retrieval system
