Pan paniscus (bonobo): 100993390
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Entry
100993390 CDS
T02283
Symbol
SKIC3
Name
(RefSeq) superkiller complex protein 3 isoform X1
KO
K12600
superkiller protein 3
Organism
pps
Pan paniscus (bonobo)
Pathway
pps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100993390 (SKIC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pps03019
]
100993390 (SKIC3)
Messenger RNA biogenesis [BR:
pps03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
100993390 (SKIC3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_8
TPR_16
TPR_14
TPR_17
TPR_CcmH_CycH
TPR_12
TPR_11
CFAP70_TPR_C
ANAPC3
CFAP70_mid_TPR
TPR_9
TTC22_N
ARM_TT21_5th
Fis1_TPR_C
CABIN1_N
ARM_TT21_C
ARM_TT21_2nd
TPR_15
TPR_20
TPR_5
Sel1
DUF7017
BTAD
TPR_Psidin_N
T7SS_EccA1_N
TPR_6
DUF7708
TPR_30
Coatomer_E
Retrotran_gag_2
Motif
Other DBs
NCBI-GeneID:
100993390
NCBI-ProteinID:
XP_003822811
Ensembl:
ENSPPAG00000032676
LinkDB
All DBs
Position
4:19824148..19921976
Genome browser
AA seq
1564 aa
AA seq
DB search
MSSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQ
SAYKKAAELEPDQLLAWQGLANLYEKYNHINAKDDLPGVYQKLLDLYESVDKQKWCDVCK
KLVDLYYQEKKHLEVARTWHKLIKTRQEQGAENEELHQLWRKLTQFLAESTEDQNNETQQ
LLFTAFENALGLSDKIPSEDHQVLYRHFIQSLSKFPHESARLKKACEGMINIYPTVQYPL
EVLCLHLIESGNLTDEGQQYCCRLVEMDSKSGPGLIGLGIKALQDKKYEDAVRNLTEGLK
ESPVCTSGWYHLAEAQVKMHRPKEAVLSCSQALKIIDNLGASGNSLYQRNLCLRLKAEAL
IKLSDYDSSEEAIRTLDQISDADNIPGLLVLKSLAYRNKGSFDEAAKIMEDLLSSYPDLA
EVHALEALIHFTRKDYLQAEKCFQRALEKDTEVAEYHYQLGLTYWFMGEETRKDKTKALT
HFLKAARLDTYMGKVFCYLGHYYRDVMGDKNRARGCYRKAFELDDTDAESGAAAVDLSVE
LEDMEMALAILTTVTQKASAGTAKWAWLRRGLYYLKAGQHSQAVADLQAALRADPKDFNC
WESLGEAYLSRGGYTTALKSFTKASELNPESTYSVFKVAAIQQILGKYKEAVAQYQMIIK
KTEDYVPALKGLGECHLMMAKAALVDYLDGKAVDYIEKALEYFTCALQHRADVSCLWKLA
GDACTCLYAVSPSKVNVHVLGVLLGQKEGKQVLKKNELLHLGGRCYGRALKLMSTSNTWC
DLGINYYRQAQHLAETGSNMNDFKELLEKSLHCLKKAVRLDSSNHLYWNALGVVACYSGI
GNYALAQHCFIKSIQSEQINAVAWTNLGVLYLTNENIEQAHEAFKMAQSLDPSYLMCWIG
QALIAEAVGSYDTMDLFRHTTELNMHTEGALGYAYWVCTTLQDKSNRETELYQYNILQMN
AIPAAQVILNKYVERIQNYAPAFTMLGYLNEHLQLKKEAANAYQRAILLLQTAEDQDTYN
VAIRNYGRLLCSIGEYDKAIQAFKSTPLEELEDIIGFALALFMKGLYKESSKAYERALSI
VESEQDKAHILTALAITEYKQGKMDVAKTLLFKCSILKEPTTESLQALCALGLAMQDATL
SKAALNELLKHIKHKDSNYQRCLLTSAIYALQGHSVAVQKQVSKAVHSNPGDPALWSLLS
RVVAQYVQRNAKGGVVAGNVAHILDLNHGKKALLYTAVNQLAMGSSSAEDEKNIALKTIQ
KAALLSPGDPAIWAGLMAACHAEDKLALVNNTQPKRIDLYLALLSAVSASIKDKKFFENY
NQSLEKWSLSQAVTGLIDTGRISEAETLCTKNLKSNPDQPAVILLLRQVQCKPLLESQKP
LPDAVLEELQKTVMSNSTSFPAWQWLAHVYQSQGMMRAAEMCYRKSLQVASQQGSWSGKL
SSLLKLALLALKVCMANISNDHWPSLVQEATTEALKLCFCPLAVLLQALLQFKRKMGARE
TRRLLERVVYQPGYPKSIASTARWYLLRHLYAKDDYELIDVLVNNAKTHGDTRALELNQR
LSSQ
NT seq
4695 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcaaggaagtgaagactgctctaaaaagtgctagagatgcaatcagaaacaaa
gaatacaaagaagctttgaaacactgtaagacagtgttaaagcaagagaaaaataactat
aatgcctgggtttttattggtgttgctgcagctgaactagaacaacctgatcaggcccag
agtgcctataaaaaagctgctgaattagagccagaccaattactagcttggcaggggtta
gcaaacttgtatgagaaatataatcacataaatgctaaggatgacttgcctggtgtttac
caaaagctcctagatctttatgagagtgttgacaagcagaagtggtgtgatgtctgcaag
aaacttgtggatctatattaccaagaaaagaaacacctagaggtggctcgaacatggcac
aagttgataaaaacacggcaggaacaaggtgcagaaaatgaagagcttcatcaactatgg
agaaaattgactcagttcctggctgaaagtacagaggaccagaataatgaaactcagcaa
ttgctttttactgcttttgagaatgcactgggattatcagataagattcctagtgaagat
caccaagtactttataggcatttcattcagagtttatccaaatttcctcatgagtctgct
agattgaagaaggcctgtgaaggaatgataaacatctatcctactgtacagtatccatta
gaagtgctttgtttgcatttaattgaatcaggaaatcttactgatgaggggcagcagtat
tgttgtagattagtggaaatggattcaaaaagtggtccaggcctcattggcttaggcatt
aaagcattacaagacaaaaagtatgaagatgctgttaggaacctaacagaagggttaaag
gaaagccctgtctgcacaagtggatggtatcatctggcagaagcccaagtcaaaatgcat
agacctaaagaagctgttctttcatgcagtcaagctctgaagatcatagataatcttggt
gcgtctggtaacagtctttatcagaggaatctttgtcttcgtttgaaagcagaggctttg
attaaactctcagattatgactcttcagaggaagcaattcgtacgcttgatcagatttct
gatgcagataatatcccaggacttttggttctcaaaagcttggcctatcggaacaaaggt
tcatttgatgaagctgcaaagattatggaagaccttctctcttcttaccctgacctagct
gaagttcatgcccttgaggctttgattcatttcaccagaaaggactatctacaagcagaa
aaatgttttcagagagctcttgagaaagataccgaagttgcagaatatcattaccaactt
ggattaacatactggttcatgggtgaagagacaagaaaagataaaacaaaggctcttacc
cactttctgaaggctgcaagactggatacatatatgggcaaagttttctgctatttaggt
cattattatagagacgtaatgggagataaaaacagagctcgtggatgttataggaaagcc
tttgaattagatgacactgatgctgaatctggagctgcagcggttgacctaagtgtggag
cttgaagatatggaaatggctttagctatcctaacaacagtaactcaaaaggcaagtgct
ggaacggcaaaatgggcctggcttaggcgaggactatactatttgaaagctggtcagcat
tctcaagcagtggctgatttacaggcagcattaagagcagacccaaaggacttcaattgt
tgggaatcgttaggagaagcatacttaagcagaggaggctacacaacagccttgaagtcc
ttcacaaaagccagtgagctgaacccagaatccacatacagtgtgtttaaggttgcagca
atacagcaaatcctaggcaaatataaggaggctgtagctcaataccagatgatcattaaa
aagacagaagattatgtgcctgctttaaaaggtttgggtgaatgccatcttatgatggca
aaagcagctctagttgattatcttgatggaaaagccgtagactacatagaaaaagcactg
gaatattttacttgtgctctacagcatcgagctgatgtgtcctgcctctggaagctagct
ggggatgcttgtacctgtctgtatgctgtctcaccatctaaagtgaatgttcatgtttta
ggagtccttctaggtcagaaagaaggaaaacaagtattaaagaaaaatgagctcctccac
cttggaggaaggtgttatggtcgtgcattaaaactgatgtctacatctaatacatggtgt
gaccttggaattaattattatcgccaagcacaacatctagcagaaacaggcagcaacatg
aatgattttaaggagttgctggagaaatctttacattgtctgaaaaaagcagtgagactc
gacagtagtaatcacttatactggaatgctcttggtgtggttgcatgttacagtggtatt
ggaaattatgcccttgctcagcactgtttcatcaaatcaatccagtcagaacaaattaat
gctgttgcatggaccaacttgggagtgttatacctcacaaatgaaaatattgagcaagct
catgaagctttcaaaatggcccaatcccttgatccatcttatttaatgtgctggattgga
caagctcttattgctgaggcagttggaagttatgacaccatggatcttttcaggcacact
acagaactaaatatgcataccgaaggagcattaggttatgcgtattgggtctgcacaaca
ttgcaagataaaagcaacagagaaacagagctgtaccagtacaacatcctccagatgaat
gctattccagcagcacaagttattttgaataaatatgtagaaagaattcagaattatgcc
ccagctttcacaatgttgggttacttaaacgaacatctacaactgaaaaaggaagcagca
aatgcataccaaagggcaattttgttgttacagactgcagaagaccaagatacttacaat
gttgcaataagaaattacggcagattgttatgttccattggtgaatatgataaagctatc
caggcttttaagtcaacaccccttgaagagttagaagacatcataggttttgcattggct
ttattcatgaaggggctttataaagagagcagcaaagcctatgagagagccttgtctatt
gttgaatcagagcaagacaaagcccatatcttgacagctctggcaataactgaatataaa
caaggaaaaatggatgtagccaagacattgctatttaaatgctctatcttaaaggaacca
accacagaaagccttcaagccctgtgtgctctagggttggcaatgcaggatgctacattg
tcaaaagcagcacttaatgagttactgaagcacatcaaacacaaagacagtaattatcag
aggtgccttcttacatcagcgatttatgcactccaaggccacagtgtggctgtgcaaaaa
caagtatctaaagctgttcacagcaaccctggtgaccctgctctttggtctctgttgtct
cgagttgttgcacagtatgttcaacgaaatgcaaagggaggtgttgtagcaggaaatgtg
gctcatattctggacttaaatcatggaaagaaggcattactgtacactgcggtaaatcag
ttggctatgggaagcagttcagcagaagatgaaaaaaatattgcactaaagaccattcag
aaggcagctctcctttctccaggtgatcctgctatctgggctgggctaatggcagcctgt
cacgctgaggataaactggccttagtgaacaacactcagccaaagaggatagatttatac
ttggcactgttatctgctgtttctgcttcaattaaagacaaaaaattctttgaaaattac
aaccagtctcttgaaaagtggtctctctcacaagctgtcactggtctaatagacacagga
agaatatctgaagctgaaactctctgcacaaagaatttaaaaagtaaccctgatcagcca
gccgttatcttacttttgagacaagttcagtgtaaaccactcttggagtcacaaaagcca
ctcccagatgctgtacttgaagaactacaaaaaacagtcatgtccaactcaacctctttt
ccagcttggcagtggctggcacatgtgtatcagtcccaaggaatgatgagagctgcagag
atgtgttacagaaagagtctacaagtggcatcccaacagggcagttggagtgggaagctc
tcaagtctgttgaaactagcactacttgcattaaaagtctgtatggctaacatttccaat
gatcactggccatctttggttcaagaggctacaactgaggccttgaagctttgcttttgt
ccactggctgttcttttacaagctttgttacaattcaaacgcaaaatgggggcaagagag
acacggcgtcttttggaaagagtggtatatcagcctgggtatcccaaatctattgcgtca
accgcacgttggtacctactgagacacttatatgccaaagatgactatgagcttattgat
gtgctggtaaacaatgccaaaactcatggagatacaagagcattggaactgaatcagaga
ttgtcctcacaataa
DBGET
integrated database retrieval system
