Podospora pseudoanserina: QC764_0040090
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Entry
QC764_0040090 CDS
T09816
Symbol
DED1
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ppsa
Podospora pseudoanserina
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ppsa03019
]
QC764_0040090 (DED1)
03041 Spliceosome [BR:
ppsa03041
]
QC764_0040090 (DED1)
03036 Chromosome and associated proteins [BR:
ppsa03036
]
QC764_0040090 (DED1)
Enzymes [BR:
ppsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QC764_0040090 (DED1)
Messenger RNA biogenesis [BR:
ppsa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
QC764_0040090 (DED1)
mRNA cycle factors
Common to processing body (P body) and stress granule
QC764_0040090 (DED1)
Spliceosome [BR:
ppsa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
QC764_0040090 (DED1)
Chromosome and associated proteins [BR:
ppsa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
QC764_0040090 (DED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
87960815
NCBI-ProteinID:
XP_062803428
LinkDB
All DBs
Position
2:3285811..3289765
Genome browser
AA seq
693 aa
AA seq
DB search
MADQLSGGMGNLSLDQAPAAAQLAGQHPGGRSYIPPHLRGKIGANAPAPAMNNGPAPGAM
NGLNNSAWAGNNSFDARANTNFGPTPGGAASYESAPPPQQQSWGNRQGGFNRNAYGGGRS
NVGGNMGGGGGPIGRGEGRWSDGQHIIGNPDPRVERELFGTADDPSKQHTGINFEKYDDI
PVTPSGHDVPEPVLTFSHPPLDKHLLSNIELARYKIPTPVQKYSIPIVIGGRDLMACAQT
GSGKTGGFLFPILHQSFVQGPSPIPAQGGGGGGYRQRKAYPTALILAPTRELVSQIYDES
RKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVL
DEADRMLDMGFEPQIRRIVQGEDMPPTGQRQTLMFSATFPRDIQMLAQDFLNDYVFLSVG
RVGSTSENITQKVEYVEDVDKRSVLLDILHTHAGGLTLIFVETKRMADSLSDFLINQNFP
ATSIHGDRTQRERERALELFRNGKCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVH
RIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEANQEVPGFLETIARESSFGGGRGGR
GGGGRGRGRGGNTDFRKGGGFSGGGGGGYGGGGFGGHSSGGGGFGGGGGGYGGAPPSGGF
GGGGYGSGGGGGGGYSGGGGYGNPGGGGGQSWW
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atggccgatcaactcagcggcggcatgggcaacctgtccctcgatcaggctcccgcggcg
gctcagctcgctggtcagcaccccggcggtcgctcttacattcctcctcaccttcgcggc
aagattggggctaatgctcccgctcctgccatgaacaacggacctgctcctggtgccatg
aatgggctcaacaacagtgcctgggctggcaacaacagcttcgatgctcgtgccaacacc
aactttggtcccactcctggcggcgctgcttcttacgagtctgcccctccccctcagcag
cagtcttggggcaaccgtcagggtggcttcaaccgcaacgcctacggcggtggacgctcc
aatgtcggcgggaacatgggcggcggcggcggtcctatcggccgcggtgagggtcgctgg
agcgatggccagcacatcattggcaaccccgacccgcgcgtcgagcgtgagctcttcggc
actgctgatgacccgagcaagcagcacactgggatcaactttgagaagtacgacgacatc
ccggtcactccttccggccatgatgtccctgagcccgtcttgaccttctcccacccccct
ctggacaagcatctcttgagcaacatcgagcttgctcgctacaagatccctacccctgtc
cagaagtactcgatccccatcgtcattggcggtcgtgatttgatggcttgcgcccagaca
ggttccggcaagactggtggtttcttgttccccatccttcaccagtccttcgttcagggt
ccttcccccattcctgcccagggtggcggcggcggtggttaccgccagcgcaaggcttac
cccactgccctcatcttggcccccacccgtgagttggtctctcagatctacgatgagtcc
cgcaagttcgcctaccgttcgtgggtccgcccttgcgttgtctacggtggtgccgatata
ggctctcagctccgccaaatcgagcgcgggtgcgatcttcttgttgctacccccggcaga
ttggtcgacctcatagagcgtggtcgcatctccctctgcaacatcaagtatcttgtcctt
gacgaggccgatcgcatgcttgacatgggtttcgagccccaaattcgccgcatcgtccag
ggtgaggacatgcctcctaccggccaacgccaaactctcatgttttcggccaccttcccc
cgcgacatccagatgctcgctcaggacttcttgaacgactacgtcttcttgtctgtcggt
cgtgttggttctacttcagagaacatcacccagaaggtcgagtacgttgaggatgttgac
aagcgctccgtccttcttgatatccttcacacccacgccggtggtctcacccttatcttt
gttgagaccaagcgcatggccgactccctttcggatttcttgatcaaccagaacttcccc
gccacctcgattcacggtgatcgtacccagcgtgagcgtgagcgtgccctcgagcttttc
cgcaatggcaagtgccctatcttggtcgccactgctgttgctgcccgtggtttggatatt
cccaacgtcacccacgttatcaactacgatctccccaccgacattgatgactacgttcat
cgtatcggtcgtaccggccgtgctggcaacaccggtattgctactgctttcttcaaccgt
ggcaaccgtggtgtcgtccgcgagctcctcgagcttctcaaggaggccaaccaggaggtt
cccggcttcctcgagaccattgctcgtgagtcttcattcggcggtggacgtggcggccgt
ggtggtggcggtcgcggtcgtggccgtggcggcaacaccgatttccgcaagggcggtggt
ttcagcggtggcggtggtggtggttatggcggtggtggtttcggtggacacagctctggc
ggcggcggcttcggcggcggcggtggtggctacggcggtgctccccccagcggaggcttt
ggcggcggtggttatggcagcggcggcggcggtggtggtggttacagcggtggcggcggc
tacggcaaccctggcggcggtggtggtcagtcgtggtggtaa
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