Podospora pseudoanserina: QC764_113680
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Entry
QC764_113680 CDS
T09816
Symbol
PRP16
Name
(RefSeq) DEAH-box RNA helicase prp16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ppsa
Podospora pseudoanserina
Pathway
ppsa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ppsa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
QC764_113680 (PRP16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ppsa03041
]
QC764_113680 (PRP16)
Enzymes [BR:
ppsa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QC764_113680 (PRP16)
Spliceosome [BR:
ppsa03041
]
Complex C
Other components
Step II factors
QC764_113680 (PRP16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
SRP54
nSTAND3
SLFN-g3_helicase
ResIII
AAA_30
ATPase
T2SSE
Flavi_DEAD
AAA_16
PhoH
ABC_tran
NACHT
AAA_7
Motif
Other DBs
NCBI-GeneID:
87963489
NCBI-ProteinID:
XP_062805570
LinkDB
All DBs
Position
1:complement(4707693..4710689)
Genome browser
AA seq
998 aa
AA seq
DB search
MGRDYEDDRSNKRRKLDFNPLRNDDRFSDIPSRPQNRFNSRSSTPRAGPRLAGASTPKQR
EFDGPEEGVDDQDAINALDRDWYGGDDDLGGHTFGDDTHNPFGDEAGWAAQEREAALIEK
KVANFSRGGMNARQLQKQKDVDAWETNRMLTSGVAQRRDMGRDFEDDQEGTRVHLLVHDL
RPPFLDGRTVFTKQLEPIPAVRDAQSDMAVFSRKGSRVVKERRTQRERAKQAQEATNVAG
TALGNLMGVKEEDTDSALPIASEESGKAQNSNKFSEHMKKSEGASNFSQSKSLKEQREYL
PAFAVREDLLRVIRDNQVVIVVGETGSGKTTQLAQFLYEDGYGKVGMIGCTQPRRVAAMS
VAKRVAEEMEVKLGSTVGYAIRFEDCTSKETVIKYMTDGVLLRESLNEPDLDRYSCVIMD
EAHERALNTDVLMGLFKKILQRRRDLKLIVTSATMNSKRFSDFYGGAPEFTIPGRTFPVD
VMFHRSPVEDYVDAAVQQVLAIHVGKPAGDILVFMTGQEDIEVTCELVRERLDALNDPPK
LSILPIYSQMPADLQAKIFDRAAPGVRKCIVATNIAETSLTVDGIMYVVDAGYSKLKVYN
PRMGMDTLQITPISQANASQRSGRAGRTGPGQAYRLFTEKAFKDDMYISTIPEIQRTNLS
NTVLLLKSLGVKDLLDFDFMDPPPQDTITTSLFDLWALGALDNLGELTDLGRKMNAFPMD
PSLAKLLIMSEQYGCSEEMVTIVSMLSVPNVFFRPKERQEESDAAREKFFVPESDHLTYL
HVYTQWKANGYSDRWCVQHFLHSKSLRRAKEVRDQLLDIMKMQQMEMVSCGTDWDVIRKC
ICSGYYHQAAKVKGIGEYINLRTSVTVQLHPTSALYGLGFLPDYVIYHELILTSKEYMST
VTSVDPHWLAELGGVFYSVKEKGYSAREKRITETEFNKKMEIEAQMAADKKRHEEEVQAE
EELKLVKKAGPAGKSKDKKTVTSGVVVKPVRKRAGRGF
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgggccgtgactacgaagatgaccgctcgaacaagcggaggaagctggacttcaaccca
ctgcgcaacgacgatcgattcagcgacatcccatcccgcccccaaaaccgcttcaactcg
agaagctctacaccgcgcgccggcccaagattggctggcgcatccacaccaaagcaacga
gagtttgacggcccagaagagggcgtcgacgaccaagatgccatcaacgctctcgaccgc
gattggtatggtggtgacgatgacttgggtggacacacgtttggcgacgacacccataat
ccattcggcgatgaggcaggctgggcagcgcaggaaagggaggccgccttgatagagaaa
aaggtcgccaacttttcgcgcggcggcatgaacgcgcgacagttgcagaaacaaaaggat
gttgatgcgtgggagaccaacagaatgctcacatccggtgtggcgcaacggagagatatg
ggacgcgattttgaggacgaccaagaagggacccgcgttcatcttctcgtgcatgaccta
cgaccgccgttcttggacggacgaactgtctttacgaagcaattggagcccattcctgcc
gttcgagatgcccaaagtgatatggctgtcttcagcaggaaagggagtcgcgttgtgaag
gaaaggcgcacgcagagagaacgcgcaaaacaggctcaggaggcaacaaacgtggcagga
actgcgctgggtaacttgatgggggtgaaagaagaggacaccgacagcgcccttcccatc
gcgagtgaggaatctggaaaggcgcaaaactcgaacaaattcagcgaacatatgaagaaa
tcggagggcgcaagcaacttcagtcaaagcaaatccttgaaagaacagcgggagtatctt
ccagcgtttgctgttcgcgaagatttgctgcgggtaattcgagacaaccaagtggtcatt
gtggtcggagaaacaggctctggcaaaacgacacagctggcccagtttctgtatgaagat
ggctacggcaaggttggtatgattgggtgcacacagccccgaagagtagcagcaatgagt
gttgccaaacgtgtggctgaggaaatggaagtaaaactcgggagtacagtgggctatgcg
attcgtttcgaggactgcaccagcaaagagaccgttatcaagtacatgacagatggtgtg
ttgcttcgagaatctctgaatgagccggaccttgatcgatactcgtgcgtcatcatggat
gaagcccacgaaagagcgctcaataccgacgttctcatgggcttgttcaaaaagattctt
cagagacgccgcgatctgaaactgatcgtgacttcggccacgatgaactccaaacgcttc
tccgacttttacggcggagctcccgagttcacgatcccaggtcgaacattccccgttgat
gtcatgtttcaccggtcacctgttgaggactacgtggatgcggccgtgcagcaggtcctg
gcgattcatgtgggcaaaccagcaggcgatattctggtattcatgacgggccaggaagat
atcgaggtaacgtgtgagcttgtccgtgaacgcctggatgcgctcaacgatcctccaaag
ctcagcatcctccctatttacagtcaaatgccggcagatttgcaggccaagattttcgac
cgagcggccccgggtgttcggaaatgtatcgtggccaccaacattgccgagaccagtttg
acggtcgatggtatcatgtatgtggttgacgcagggtactcgaagctcaaagtgtacaac
ccacgaatgggtatggacacgctacaaatcacccccatctcgcaagcaaacgcatcgcag
cgttccggtcgtgccgggcgaaccggccccggacaggcctaccgtcttttcaccgaaaag
gccttcaaagacgatatgtacatctccacaatccccgagattcaaagaaccaacctgagc
aacacagtcttgctcctcaagtccctcggcgtcaaagacctgctcgactttgactttatg
gaccccccaccccaagacaccatcacgacctccttgttcgacctgtgggcgctgggagcc
ctggacaacctcggcgagctgaccgacctggggcggaagatgaacgccttccccatggac
ccctccctcgccaaacttctgatcatgtcggagcaatatggctgcagcgaagagatggtc
accatcgtctcgatgctctccgtccccaacgtcttcttccgacctaaagaacgccaggag
gaatccgacgccgcacgggagaagttcttcgtgccagaatcagaccacctgacctatctc
cacgtctacacgcagtggaaagcaaacgggtacagcgaccggtggtgcgtccagcacttt
ttgcactccaagtccctccgccgcgcgaaagaggtccgggaccagctgctggatatcatg
aagatgcagcagatggaaatggtgagctgcgggacggactgggacgtgatccggaagtgc
atctgctcggggtattaccatcaggcggccaaagtcaagggcataggcgagtacattaat
ttgcgaacgtcggtgacggtccagctccacccgacgagcgcgctttatgggctggggttc
ttgccggattatgttatttatcatgagctgatcctgacgtcgaaggagtacatgtctacg
gtcacgtcggtggaccctcactggctggccgagctgggcggggtgttttattcggtcaag
gagaaggggtattcggctagggagaagaggatcacggagaccgagtttaacaaaaagatg
gagattgaggcgcagatggcggcggataaaaagaggcatgaggaggaggtgcaggccgag
gaggagctgaagctggtgaagaaggctggtccggcggggaagagtaaagataaaaagacg
gtcacgtcgggggtggtggtgaagcccgtgaggaagagggctgggagggggttttaa
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